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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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98 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ALDH3B1
ENSSSCG00000028501
ENSG00000006534
Aldehyde dehydrogenase family 3 member B1
Tissue enhanced
Detected in many
lung:
26.5
B3GNT4
ENSSSCG00000009798
ENSG00000176383
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
Tissue enhanced
Detected in many
fallopian tube:
37.4
lung:
26.9
upper respiratory system:
15.5
C16orf54
ENSSSCG00000029752
ENSG00000185905
Chromosome 16 open reading frame 54
Tissue enhanced
Detected in many
lung:
33.0
lymphoid tissue:
38.1
CALCRL
ENSSSCG00000016031
ENSG00000064989
Calcitonin gene-related peptide type 1 receptor precursor
Tissue enhanced
Detected in many
lung:
51.7
CCDC114
ENSSSCG00000026689
ENSG00000105479
Coiled-coil domain containing 114
Tissue enhanced
Detected in many
choroid plexus:
27.8
fallopian tube:
35.7
lung:
33.0
CCL3L1
ENSSSCG00000017700
ENSG00000277632
C-C motif chemokine 3-like 1 precursor
Tissue enhanced
Detected in many
dura mater:
10.8
liver:
15.6
lung:
10.2
CCNO
ENSSSCG00000026849
ENSG00000152669
Cyclin O
Tissue enhanced
Detected in many
lung:
7.3
upper respiratory system:
20.5
CD48
ENSSSCG00000006379
ENSG00000117091
CD48 antigen precursor
Tissue enhanced
Detected in many
lung:
23.1
lymphoid tissue:
39.4
upper respiratory system:
20.0
CFAP46
ENSSSCG00000010768
ENSG00000171811
Cilia and flagella associated protein 46
Tissue enhanced
Detected in many
fallopian tube:
37.6
lung:
31.0
testis:
19.4
CFAP74
ENSSSCG00000030513
ENSG00000142609
Cilia and flagella associated protein 74
Tissue enhanced
Detected in many
kidney:
23.9
lung:
25.6
CLEC7A
ENSSSCG00000000648
ENSG00000172243
C-type lectin domain family 7 member A
Tissue enhanced
Detected in many
lung:
9.6
CROCC2
ENSSSCG00000036261
ENSG00000226321
Ciliary rootlet coiled-coil, rootletin family member 2
Tissue enhanced
Detected in many
adipose tissue:
27.6
fallopian tube:
21.7
lung:
13.6
upper respiratory system:
16.7
CSF2
ENSSSCG00000023737
ENSG00000164400
Granulocyte-macrophage colony-stimulating factor precursor
Tissue enhanced
Detected in many
lung:
9.1
CSF3R
ENSSSCG00000025795
ENSG00000119535
Colony stimulating factor 3 receptor
Tissue enhanced
Detected in many
dura mater:
20.7
lung:
17.6
lymphoid tissue:
21.1
CXCL8
ENSSSCG00000008953
ENSG00000169429
Interleukin-8
Tissue enhanced
Detected in many
large intestine:
26.1
lung:
25.1
small intestine:
17.2
upper respiratory system:
25.1
CYP2B22
ENSSSCG00000003006
ENSG00000197408
Cytochrome P450 2B22 precursor
Tissue enhanced
Detected in many
esophagus:
30.3
lung:
33.2
upper respiratory system:
92.8
CYP4B1
ENSSSCG00000003894
ENSG00000142973
Cytochrome P450 family 4 subfamily B member 1
Tissue enhanced
Detected in many
adipose tissue:
47.5
lung:
64.9
salivary gland:
50.4
upper respiratory system:
47.5
CYTIP
ENSSSCG00000029753
ENSG00000115165
Cytohesin 1 interacting protein
Tissue enhanced
Detected in many
lung:
29.0
lymphoid tissue:
32.3
small intestine:
21.5
DNAH11
ENSSSCG00000015379
ENSG00000105877
Dynein axonemal heavy chain 11
Tissue enhanced
Detected in many
choroid plexus:
16.0
fallopian tube:
31.5
lung:
27.2
upper respiratory system:
22.7
DPEP2
ENSSSCG00000021105
ENSG00000167261
Dipeptidase 2
Tissue enhanced
Detected in many
fallopian tube:
37.2
lung:
14.5
upper respiratory system:
24.9
FAM92B
ENSSSCG00000002668
ENSG00000153789
Protein FAM92B
Tissue enhanced
Detected in many
fallopian tube:
20.8
lung:
16.2
upper respiratory system:
20.9
FLVCR2
ENSSSCG00000021606
ENSG00000119686
Feline leukemia virus subgroup C receptor-related protein 2
Tissue enhanced
Detected in many
liver:
25.8
lung:
43.1
FMO2
ENSSSCG00000015267
ENSG00000094963
Flavin containing monooxygenase 2
Tissue enhanced
Detected in many
adipose tissue:
44.7
dura mater:
53.5
lung:
37.0
upper respiratory system:
66.9
GP91-PHOX
ENSSSCG00000012229
ENSG00000165168
Cytochrome b-245 heavy chain precursor
Tissue enhanced
Detected in many
lung:
31.0
lymphoid tissue:
49.0
synovial tissue:
37.3
GPLD1
ENSSSCG00000001089
ENSG00000112293
Glycosylphosphatidylinositol specific phospholipase D1
Tissue enhanced
Detected in many
liver:
45.1
lung:
26.3
GPNMB
ENSSSCG00000032241
ENSG00000136235
Transmembrane glycoprotein NMB precursor
Tissue enhanced
Detected in many
cervix:
50.5
lung:
48.5
ovary:
64.0
GPRC5A
ENSSSCG00000029592
ENSG00000013588
G protein-coupled receptor class C group 5 member A
Tissue enhanced
Detected in many
cartilage:
35.0
large intestine:
51.4
lung:
52.1
synovial tissue:
47.7
ICAM1
ENSSSCG00000013655
ENSG00000090339
Intercellular adhesion molecule 1 precursor
Tissue enhanced
Detected in many
lung:
45.5
ICAM3
ENSSSCG00000013649
ENSG00000076662
Intercellular adhesion molecule 3 precursor
Tissue enhanced
Detected in many
dura mater:
9.3
lung:
8.6
lymphoid tissue:
21.6
IKZF3
ENSSSCG00000017494
ENSG00000161405
IKAROS family zinc finger 3
Tissue enhanced
Detected in many
lung:
19.1
lymphoid tissue:
49.4
small intestine:
20.5
stomach:
22.2
upper respiratory system:
27.0
IL1A
ENSSSCG00000008090
ENSG00000115008
Interleukin-1 alpha
Tissue enhanced
Detected in many
lung:
17.9
KIAA2012
ENSSSCG00000016110
ENSG00000182329
KIAA2012
Tissue enhanced
Detected in many
choroid plexus:
15.2
fallopian tube:
20.5
lung:
21.6
upper respiratory system:
38.7
KLRF1
ENSSSCG00000000655
ENSG00000150045
Killer cell lectin like receptor F1
Tissue enhanced
Detected in many
lung:
12.1
mesothelial tissue:
11.9
LPAR3
ENSSSCG00000003756
ENSG00000171517
Lysophosphatidic acid receptor 3
Tissue enhanced
Detected in many
fallopian tube:
14.0
lung:
11.7
upper respiratory system:
13.2
LRRC23
ENSSSCG00000000679
ENSG00000010626
Leucine rich repeat containing 23
Tissue enhanced
Detected in many
fallopian tube:
24.2
lung:
15.1
testis:
26.6
upper respiratory system:
24.0
LRRC71
ENSSSCG00000006462
ENSG00000160838
Leucine rich repeat containing 71
Tissue enhanced
Detected in many
epididymis:
27.3
fallopian tube:
35.6
lung:
17.2
upper respiratory system:
17.3
MAPK15
ENSSSCG00000035933
ENSG00000181085
Mitogen-activated protein kinase 15
Tissue enhanced
Detected in many
fallopian tube:
59.5
lung:
50.4
upper respiratory system:
25.1
METRN
ENSSSCG00000008005
ENSG00000103260
Meteorin, glial cell differentiation regulator
Tissue enhanced
Detected in many
brain:
6.4
fallopian tube:
6.1
lung:
6.5
MYO1G
ENSSSCG00000016742
ENSG00000136286
Myosin IG
Tissue enhanced
Detected in many
lung:
16.4
lymphoid tissue:
39.0
stomach:
20.4
na
ENSSSCG00000004415
Tissue enhanced
Detected in many
fallopian tube:
35.3
lung:
13.8
upper respiratory system:
21.8
na
ENSSSCG00000008769
Tissue enhanced
Detected in many
lung:
56.8
synovial tissue:
29.4
na
ENSSSCG00000015687
Tissue enhanced
Detected in many
large intestine:
6.6
lung:
6.6
lymphoid tissue:
9.5
na
ENSSSCG00000016400
ENSG00000172478
Tissue enhanced
Detected in many
heart:
13.5
lung:
10.3
mouth:
24.0
skin:
13.3
na
ENSSSCG00000022876
Tissue enhanced
Detected in many
fallopian tube:
13.9
heart:
8.2
lung:
13.6
upper respiratory system:
7.0
na
ENSSSCG00000023812
Tissue enhanced
Detected in many
choroid plexus:
31.4
fallopian tube:
64.2
lung:
22.4
testis:
26.5
upper respiratory system:
28.8
na
ENSSSCG00000024552
Tissue enhanced
Detected in many
fallopian tube:
35.9
lung:
20.5
testis:
42.0
upper respiratory system:
22.1
na
ENSSSCG00000026486
GRAM domain containing 2-like
Tissue enhanced
Detected in many
epididymis:
18.3
lung:
13.4
na
ENSSSCG00000031037
Tissue enhanced
Detected in many
large intestine:
180.5
lung:
127.2
small intestine:
136.6
upper respiratory system:
377.3
na
ENSSSCG00000031798
Tissue enhanced
Detected in many
fallopian tube:
43.8
lung:
13.4
upper respiratory system:
21.1
na
ENSSSCG00000031926
Tissue enhanced
Detected in many
lung:
9.1
skeletal muscle:
9.6
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