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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
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Cancers
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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30 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CRYGB
ENSSSCG00000039241
ENSG00000182187
Crystallin gamma B
Tissue enriched
Detected in single
lens:
2488.8
CRYGC
ENSSSCG00000039620
ENSG00000163254
Crystallin gamma C
Tissue enriched
Detected in single
lens:
868.5
CRYBB2
ENSSSCG00000009955
ENSG00000244752
Crystallin beta B2
Tissue enriched
Detected in single
lens:
2196.1
MIP
ENSSSCG00000000400
ENSG00000135517
Major intrinsic protein of lens fiber
Tissue enriched
Detected in single
lens:
675.3
CRYBA1
ENSSSCG00000040641
ENSG00000108255
Crystallin beta A1
Tissue enriched
Detected in single
lens:
2538.5
na
ENSSSCG00000009965
Tissue enriched
Detected in single
lens:
2514.3
na
ENSSSCG00000040440
ENSG00000196431
Tissue enriched
Detected in single
lens:
572.1
na
ENSSSCG00000038814
Tissue enriched
Detected in single
lens:
330.0
na
ENSSSCG00000036186
Tissue enriched
Detected in single
lens:
329.5
CRYBB1
ENSSSCG00000009964
ENSG00000100122
Beta-crystallin B1
Tissue enriched
Detected in single
lens:
1037.4
CRYBB3
ENSSSCG00000009954
ENSG00000100053
Crystallin beta B3
Tissue enriched
Detected in single
lens:
1634.4
LIM2
ENSSSCG00000003232
ENSG00000105370
Lens intrinsic membrane protein 2
Tissue enriched
Detected in single
lens:
628.1
CRYGS
ENSSSCG00000040431
ENSG00000213139
Crystallin gamma S
Tissue enriched
Detected in single
lens:
824.8
CRYGD
ENSSSCG00000034967
ENSG00000118231
Crystallin gamma D
Tissue enriched
Detected in single
lens:
206.4
LGSN
ENSSSCG00000004450
ENSG00000146166
Lengsin, lens protein with glutamine synthetase domain
Tissue enriched
Detected in single
lens:
570.2
BFSP2
ENSSSCG00000011636
ENSG00000170819
Beaded filament structural protein 2
Tissue enriched
Detected in single
lens:
638.0
LCTL
ENSSSCG00000004947
ENSG00000188501
Lactase like
Tissue enriched
Detected in single
lens:
232.6
CRYBA2
ENSSSCG00000040776
ENSG00000163499
Crystallin beta A2
Tissue enriched
Detected in single
lens:
694.3
CRYGN
ENSSSCG00000038413
ENSG00000127377
Crystallin gamma N
Tissue enriched
Detected in single
lens:
78.6
GJE1
ENSSSCG00000034307
ENSG00000203733
Gap junction protein epsilon 1
Tissue enriched
Detected in single
lens:
28.5
GJA8
ENSSSCG00000036239
ENSG00000121634
Gap junction protein alpha 8
Tissue enriched
Detected in single
lens:
215.0
na
ENSSSCG00000032958
Tissue enriched
Detected in single
lens:
19.2
na
ENSSSCG00000036109
ENSG00000101197
Tissue enriched
Detected in single
lens:
164.2
na
ENSSSCG00000039771
Tissue enriched
Detected in single
lens:
29.8
na
ENSSSCG00000034480
Tissue enriched
Detected in single
lens:
17.8
na
ENSSSCG00000038224
Tissue enriched
Detected in single
lens:
1.9
na
ENSSSCG00000038316
Tissue enriched
Detected in single
lens:
7.0
na
ENSSSCG00000038427
Tissue enriched
Detected in single
lens:
5.3
na
ENSSSCG00000039891
Tissue enriched
Detected in single
lens:
2.4
na
ENSSSCG00000040649
Tissue enriched
Detected in single
lens:
4.5
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