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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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47 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NAP1L4
ENSSSCG00000012856
ENSG00000205531
Nucleosome assembly protein 1-like 4
Tissue enriched
Detected in all
lens:
155.7
NSFL1C
ENSSSCG00000007187
ENSG00000088833
NSFL1 cofactor p47
Tissue enriched
Detected in all
lens:
121.8
na
ENSSSCG00000007088
ENSG00000089006
Tissue enriched
Detected in all
lens:
209.1
OSGIN2
ENSSSCG00000021184
ENSG00000164823
Oxidative stress induced growth inhibitor family member 2
Tissue enriched
Detected in all
lens:
91.5
CKS1B
ENSSSCG00000006538
ENSG00000160688
Cyclin-dependent kinases regulatory subunit 1
Tissue enriched
Detected in all
lens:
165.1
CCNG1
ENSSSCG00000017024
ENSG00000113328
Cyclin-G1
Tissue enriched
Detected in all
lens:
343.5
HLCS
ENSSSCG00000012059
ENSG00000159267
Holocarboxylase synthetase
Tissue enriched
Detected in all
lens:
137.6
CARHSP1
ENSSSCG00000026710
ENSG00000153048
Calcium regulated heat stable protein 1
Tissue enriched
Detected in all
lens:
154.8
CDPF1
ENSSSCG00000000005
ENSG00000205643
Cysteine rich DPF motif domain containing 1
Tissue enriched
Detected in all
lens:
67.8
CRYZ
ENSSSCG00000003780
ENSG00000116791
Quinone oxidoreductase
Tissue enriched
Detected in all
lens:
275.6
CELF1
ENSSSCG00000013233
ENSG00000149187
CUGBP Elav-like family member 1
Tissue enriched
Detected in all
lens:
174.0
GSS
ENSSSCG00000007287
ENSG00000100983
Glutathione synthetase
Tissue enriched
Detected in all
lens:
109.2
NAMPT
ENSSSCG00000015435
ENSG00000105835
Nicotinamide phosphoribosyltransferase
Tissue enriched
Detected in all
lens:
169.3
ARVCF
ENSSSCG00000010133
ENSG00000099889
ARVCF, delta catenin family member
Tissue enriched
Detected in all
lens:
141.1
PALM
ENSSSCG00000039575
ENSG00000099864
Paralemmin-1
Tissue enriched
Detected in all
lens:
205.3
RAB39A
ENSSSCG00000031723
ENSG00000179331
RAB39A, member RAS oncogene family
Tissue enriched
Detected in all
lens:
54.9
DNMBP
ENSSSCG00000010544
ENSG00000107554
Dynamin binding protein
Tissue enriched
Detected in all
lens:
96.5
DOK4
ENSSSCG00000029165
ENSG00000125170
Docking protein 4
Tissue enriched
Detected in all
lens:
53.0
INTS13
ENSSSCG00000030443
ENSG00000064102
Protein asunder homolog
Tissue enriched
Detected in all
lens:
78.8
APBA3
ENSSSCG00000013492
ENSG00000011132
Amyloid beta precursor protein binding family A member 3
Tissue enriched
Detected in all
lens:
86.9
BMT2
ENSSSCG00000021466
ENSG00000164603
Base methyltransferase of 25S rRNA 2 homolog
Tissue enriched
Detected in all
lens:
70.1
CFAP20
ENSSSCG00000002805
ENSG00000070761
Cilia- and flagella-associated protein 20
Tissue enriched
Detected in all
lens:
56.2
ENO1
ENSSSCG00000022343
ENSG00000074800
Enolase 1
Tissue enriched
Detected in all
lens:
358.5
ERI1
ENSSSCG00000033634
ENSG00000104626
Exoribonuclease 1
Tissue enriched
Detected in all
lens:
57.1
GNL3L
ENSSSCG00000012336
ENSG00000130119
G protein nucleolar 3 like
Tissue enriched
Detected in all
lens:
61.7
GRK6
ENSSSCG00000035028
ENSG00000198055
G protein-coupled receptor kinase 6
Tissue enriched
Detected in all
lens:
136.1
HSPB11
ENSSSCG00000026264
ENSG00000081870
Heat shock protein family B (small) member 11
Tissue enriched
Detected in all
lens:
77.9
IPO8
ENSSSCG00000000534
ENSG00000133704
Importin 8
Tissue enriched
Detected in all
lens:
78.3
LYPLAL1
ENSSSCG00000010817
ENSG00000143353
Lysophospholipase like 1
Tissue enriched
Detected in all
lens:
66.8
NAGK
ENSSSCG00000008316
ENSG00000124357
N-acetylglucosamine kinase
Tissue enriched
Detected in all
lens:
122.9
NT5DC2
ENSSSCG00000011444
ENSG00000168268
5'-nucleotidase domain containing 2
Tissue enriched
Detected in all
lens:
131.7
PALM2
ENSSSCG00000033120
ENSG00000157654,ENSG00000241978
A-kinase anchor protein 2
Tissue enriched
Detected in all
lens:
233.6
PEA15
ENSSSCG00000032164
ENSG00000162734
Proliferation and apoptosis adaptor protein 15
Tissue enriched
Detected in all
lens:
683.5
PLIN3
ENSSSCG00000038954
ENSG00000105355
Perilipin-3
Tissue enriched
Detected in all
lens:
114.2
RIOK3
ENSSSCG00000029518
ENSG00000101782
RIO kinase 3
Tissue enriched
Detected in all
lens:
141.3
SESN3
ENSSSCG00000037015
ENSG00000149212
Sestrin 3
Tissue enriched
Detected in all
lens:
145.8
TMX3
ENSSSCG00000004884
ENSG00000166479
Thioredoxin related transmembrane protein 3
Tissue enriched
Detected in all
lens:
60.1
ARHGAP12
ENSSSCG00000011026
ENSG00000165322
Rho GTPase activating protein 12
Tissue enriched
Detected in all
lens:
120.9
KIAA1024
ENSSSCG00000001775
ENSG00000169330
KIAA1024
Tissue enriched
Detected in all
lens:
56.1
MINPP1
ENSSSCG00000010435
ENSG00000107789
Multiple inositol-polyphosphate phosphatase 1
Tissue enriched
Detected in all
lens:
60.4
na
ENSSSCG00000023263
ENSG00000278845
Tissue enriched
Detected in all
lens:
89.4
PARK7
ENSSSCG00000003385
ENSG00000116288
Protein DJ-1
Tissue enriched
Detected in all
lens:
158.3
PELI3
ENSSSCG00000012944
ENSG00000174516
Pellino E3 ubiquitin protein ligase family member 3
Tissue enriched
Detected in all
lens:
45.5
PHAX
ENSSSCG00000014244
ENSG00000164902
Phosphorylated adaptor for RNA export
Tissue enriched
Detected in all
lens:
61.9
SMIM7
ENSSSCG00000013863
ENSG00000214046,ENSG00000268790
Small integral membrane protein 7
Tissue enriched
Detected in all
lens:
152.5
SRI
ENSSSCG00000015298
ENSG00000075142
Sorcin isoform 2
Tissue enriched
Detected in all
lens:
129.2
TESK2
ENSSSCG00000003917
ENSG00000070759
Testis-specific kinase 2
Tissue enriched
Detected in all
lens:
130.5
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