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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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199 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABI2
ENSSSCG00000034630
ENSG00000138443
Abl interactor 2
Tissue enhanced
Detected in many
brain:
29.8
lens:
41.1
ADAMTS19
ENSSSCG00000014259
ENSG00000145808
ADAM metallopeptidase with thrombospondin type 1 motif 19
Tissue enhanced
Detected in many
adrenal gland:
31.3
cervix:
46.0
lens:
28.4
ALDH1A1
ENSSSCG00000028996
ENSG00000165092
Aldehyde dehydrogenase 1 family member A1
Tissue enhanced
Detected in many
lens:
147.3
liver:
94.7
AMT
ENSSSCG00000022975
ENSG00000145020
Aminomethyltransferase, mitochondrial
Tissue enhanced
Detected in many
lens:
24.0
liver:
17.8
ANK2
ENSSSCG00000009125
ENSG00000145362
Ankyrin 2
Tissue enhanced
Detected in many
brain:
39.6
lens:
88.5
APBA1
ENSSSCG00000005250
ENSG00000107282
Amyloid beta precursor protein binding family A member 1
Tissue enhanced
Detected in many
brain:
24.6
lens:
25.4
APBB1
ENSSSCG00000014628
ENSG00000166313
Amyloid beta precursor protein binding family B member 1
Tissue enhanced
Detected in many
brain:
43.3
lens:
26.2
ARHGEF37
ENSSSCG00000014436
ENSG00000183111
Rho guanine nucleotide exchange factor 37
Tissue enhanced
Detected in many
lens:
48.8
ARHGEF4
ENSSSCG00000035828
ENSG00000136002
Rho guanine nucleotide exchange factor 4
Tissue enhanced
Detected in many
brain:
29.4
lens:
18.4
ASXL3
ENSSSCG00000003736
ENSG00000141431
Additional sex combs like 3, transcriptional regulator
Tissue enhanced
Detected in many
brain:
11.6
lens:
12.4
testis:
16.1
B3GNT5
ENSSSCG00000024393
ENSG00000176597
Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase
Tissue enhanced
Detected in many
epididymis:
52.4
lens:
60.4
BCAS4
ENSSSCG00000007472
ENSG00000124243
Breast carcinoma-amplified sequence 4
Tissue enhanced
Detected in many
lens:
38.4
pineal gland:
27.0
BEX3
ENSSSCG00000012528
ENSG00000166681
Protein BEX3 isoform a
Tissue enhanced
Detected in many
brain:
49.3
lens:
53.2
pineal gland:
49.5
pituitary gland:
57.4
BHLHB9
ENSSSCG00000012520
ENSG00000198908
Basic helix-loop-helix family member b9
Tissue enhanced
Detected in many
brain:
43.7
lens:
21.6
pituitary gland:
44.8
C15orf61
ENSSSCG00000004954
ENSG00000189227
Chromosome 15 open reading frame 61
Tissue enhanced
Detected in many
lens:
69.9
C4orf48
ENSSSCG00000008686
ENSG00000243449
Chromosome 4 open reading frame 48
Tissue enhanced
Detected in many
brain:
41.5
lens:
37.4
testis:
57.6
CADM3
ENSSSCG00000006415
ENSG00000162706
Cell adhesion molecule 3
Tissue enhanced
Detected in many
brain:
64.4
lens:
28.0
pineal gland:
26.0
vagus nerve:
41.2
CCDC80
ENSSSCG00000011928
ENSG00000091986
Coiled-coil domain containing 80
Tissue enhanced
Detected in many
cartilage:
103.3
lens:
84.5
mesothelial tissue:
100.8
CDH2
ENSSSCG00000003722
ENSG00000170558
Cadherin 2
Tissue enhanced
Detected in many
heart:
61.5
lens:
70.7
pituitary gland:
36.5
CDK15
ENSSSCG00000022296
ENSG00000138395
Cyclin dependent kinase 15
Tissue enhanced
Detected in many
lens:
15.2
CERS6
ENSSSCG00000032715
ENSG00000172292
Ceramide synthase 6
Tissue enhanced
Detected in many
lens:
30.5
CHRDL1
ENSSSCG00000012576
ENSG00000101938
Chordin like 1
Tissue enhanced
Detected in many
lens:
58.7
CLCN4
ENSSSCG00000024809
ENSG00000073464
Chloride voltage-gated channel 4
Tissue enhanced
Detected in many
brain:
26.5
lens:
27.1
pineal gland:
12.6
retina:
12.6
CLDN6
ENSSSCG00000023743
ENSG00000184697
Claudin-6
Tissue enhanced
Detected in many
lens:
19.5
ovary:
8.7
CNKSR2
ENSSSCG00000012164
ENSG00000149970
Connector enhancer of kinase suppressor of Ras 2
Tissue enhanced
Detected in many
brain:
46.2
lens:
24.9
vagus nerve:
15.1
COL4A2
ENSSSCG00000009545
ENSG00000134871
Collagen type IV alpha 2 chain
Tissue enhanced
Detected in many
adipose tissue:
88.3
lens:
90.1
CTHRC1
ENSSSCG00000006051
ENSG00000164932
Collagen triple helix repeat containing 1
Tissue enhanced
Detected in many
lens:
61.5
ovary:
25.0
DCBLD1
ENSSSCG00000004254
ENSG00000164465
Discoidin, CUB and LCCL domain containing 1
Tissue enhanced
Detected in many
lens:
32.3
DMTN
ENSSSCG00000009613
ENSG00000158856
Dematin actin binding protein
Tissue enhanced
Detected in many
brain:
43.9
lens:
117.6
DNAAF4
ENSSSCG00000004608
ENSG00000256061
Dynein axonemal assembly factor 4
Tissue enhanced
Detected in many
lens:
23.0
testis:
23.0
DNAJC6
ENSSSCG00000003807
ENSG00000116675
Putative tyrosine-protein phosphatase auxilin
Tissue enhanced
Detected in many
brain:
54.6
lens:
18.8
pineal gland:
28.1
DTNA
ENSSSCG00000028047
ENSG00000134769
Dystrobrevin alpha
Tissue enhanced
Detected in many
lens:
51.0
skeletal muscle:
55.0
EGLN3
ENSSSCG00000001963
ENSG00000129521
Egl-9 family hypoxia inducible factor 3
Tissue enhanced
Detected in many
lens:
59.1
EHD3
ENSSSCG00000035987
ENSG00000013016
EH domain containing 3
Tissue enhanced
Detected in many
adrenal gland:
26.4
lens:
31.8
lymphoid tissue:
22.8
EPDR1
ENSSSCG00000020963
ENSG00000086289
Ependymin related 1
Tissue enhanced
Detected in many
brain:
36.2
lens:
43.4
FAM169A
ENSSSCG00000014076
ENSG00000198780
Family with sequence similarity 169 member A
Tissue enhanced
Detected in many
cornea:
32.5
lens:
32.1
pineal gland:
28.7
pituitary gland:
27.6
retina:
49.7
FAM213B
ENSSSCG00000026554
ENSG00000157870
Prostamide/prostaglandin F synthase
Tissue enhanced
Detected in many
brain:
21.2
lens:
53.5
FAM222A
ENSSSCG00000009927
ENSG00000139438
Family with sequence similarity 222 member A
Tissue enhanced
Detected in many
adrenal gland:
39.2
lens:
42.6
retina:
24.7
FAM83G
ENSSSCG00000018047
ENSG00000188522
Family with sequence similarity 83 member G
Tissue enhanced
Detected in many
cornea:
18.5
lens:
26.1
FAM89A
ENSSSCG00000038765
ENSG00000182118
Family with sequence similarity 89 member A
Tissue enhanced
Detected in many
lens:
30.4
testis:
18.6
FBXL2
ENSSSCG00000039802
ENSG00000153558
F-box and leucine rich repeat protein 2
Tissue enhanced
Detected in many
lens:
18.6
FGF1
ENSSSCG00000024954
ENSG00000113578
Fibroblast growth factor 1
Tissue enhanced
Detected in many
brain:
37.4
heart:
22.8
lens:
33.4
pineal gland:
28.4
FGFR2
ENSSSCG00000010698
ENSG00000066468
Fibroblast growth factor receptor 2 precursor
Tissue enhanced
Detected in many
cartilage:
96.5
lens:
85.2
FGFR3
ENSSSCG00000030827
ENSG00000068078
Fibroblast growth factor receptor 3
Tissue enhanced
Detected in many
lens:
40.2
male glands:
41.9
FIGN
ENSSSCG00000034262
ENSG00000182263
Fidgetin, microtubule severing factor
Tissue enhanced
Detected in many
lens:
24.3
FLYWCH2
ENSSSCG00000022630
ENSG00000162076
FLYWCH family member 2
Tissue enhanced
Detected in many
lens:
30.9
FN3K
ENSSSCG00000017131
ENSG00000167363
Fructosamine 3 kinase
Tissue enhanced
Detected in many
lens:
51.3
FOLH1B
ENSSSCG00000027093
ENSG00000086205
Glutamate carboxypeptidase 2
Tissue enhanced
Detected in many
brain:
60.3
lens:
40.1
GADD45A
ENSSSCG00000037066
ENSG00000116717
Growth arrest and DNA damage-inducible protein GADD45 alpha
Tissue enhanced
Detected in many
lens:
32.5
GDPD3
ENSSSCG00000021811
ENSG00000102886
Glycerophosphodiester phosphodiesterase domain containing 3
Tissue enhanced
Detected in many
lens:
31.0
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