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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Subclass
Class
Biological process
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Keyword
Chromosome
1
2
3
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6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
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Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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33 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000031579
ENSG00000248485
Group enriched
Detected in many
brain:
69.5
lens:
134.7
DYNC1I1
ENSSSCG00000015335
ENSG00000158560
Dynein cytoplasmic 1 intermediate chain 1
Group enriched
Detected in many
brain:
30.5
lens:
119.7
LAMA1
ENSSSCG00000034767
ENSG00000101680
Laminin subunit alpha 1
Group enriched
Detected in many
lens:
68.3
ovary:
34.5
na
ENSSSCG00000032789
Group enriched
Detected in many
brain:
76.2
lens:
81.9
pineal gland:
69.0
PROX1
ENSSSCG00000015584
ENSG00000117707
Prospero homeobox protein 1
Group enriched
Detected in many
lens:
191.6
liver:
61.8
na
ENSSSCG00000032480
ENSG00000214402
Group enriched
Detected in many
brain:
164.3
cornea:
219.4
lens:
106.1
pineal gland:
78.0
na
ENSSSCG00000039637
Group enriched
Detected in many
brain:
15.5
lens:
39.2
AMPH
ENSSSCG00000024136
ENSG00000078053
Amphiphysin
Group enriched
Detected in many
brain:
39.6
lens:
56.5
pineal gland:
19.6
pituitary gland:
21.3
retina:
32.4
C19orf84
ENSSSCG00000039649
ENSG00000262874
Chromosome 19 open reading frame 84
Group enriched
Detected in many
cervix:
6.4
lens:
24.1
CDK5R1
ENSSSCG00000017730
ENSG00000176749
Cyclin dependent kinase 5 regulatory subunit 1
Group enriched
Detected in many
brain:
59.5
lens:
37.3
GLDC
ENSSSCG00000005199
ENSG00000178445
Glycine decarboxylase
Group enriched
Detected in many
epididymis:
38.7
lens:
35.9
liver:
19.2
retina:
14.6
KCNJ18
ENSSSCG00000034773
ENSG00000260458
Potassium voltage-gated channel subfamily J member 18
Group enriched
Detected in many
brain:
21.1
lens:
77.9
skeletal muscle:
30.3
MYH7B
ENSSSCG00000007288
ENSG00000078814
Myosin heavy chain 7B
Group enriched
Detected in many
heart:
57.1
lens:
20.8
skeletal muscle:
48.9
na
ENSSSCG00000008250
ENSG00000066032
Group enriched
Detected in many
brain:
27.9
lens:
85.1
pineal gland:
27.0
na
ENSSSCG00000039942
Group enriched
Detected in many
heart:
76.2
lens:
29.2
skeletal muscle:
50.7
SCN8A
ENSSSCG00000000228
ENSG00000196876
Sodium voltage-gated channel alpha subunit 8
Group enriched
Detected in many
brain:
34.5
lens:
11.0
pineal gland:
11.7
retina:
16.6
SNCA
ENSSSCG00000009203
ENSG00000145335
Alpha-synuclein
Group enriched
Detected in many
brain:
53.8
lens:
13.9
vagus nerve:
55.7
TMOD2
ENSSSCG00000004628
ENSG00000128872
Tropomodulin 2
Group enriched
Detected in many
brain:
53.7
lens:
33.7
pineal gland:
14.7
vagus nerve:
17.7
VIT
ENSSSCG00000008501
ENSG00000205221
Vitrin
Group enriched
Detected in many
cartilage:
112.4
lens:
52.1
CDO1
ENSSSCG00000014219
ENSG00000129596
Cysteine dioxygenase type 1
Group enriched
Detected in many
lens:
88.3
liver:
54.7
male glands:
203.4
GPR179
ENSSSCG00000020884
ENSG00000277399
G protein-coupled receptor 179
Group enriched
Detected in many
lens:
7.3
retina:
26.4
MEGF9
ENSSSCG00000005506
ENSG00000106780
Multiple EGF like domains 9
Group enriched
Detected in many
lens:
106.8
retina:
33.9
vagus nerve:
52.2
na
ENSSSCG00000008254
Group enriched
Detected in many
brain:
31.5
lens:
105.5
pineal gland:
34.4
NRCAM
ENSSSCG00000015445
ENSG00000091129
Neuronal cell adhesion molecule
Group enriched
Detected in many
brain:
39.3
epididymis:
51.9
lens:
124.8
NTM
ENSSSCG00000015253
ENSG00000182667
Neurotrimin
Group enriched
Detected in many
brain:
38.2
gallbladder:
14.3
lens:
17.6
pineal gland:
30.5
retina:
15.2
PRX
ENSSSCG00000038439
ENSG00000105227
Periaxin
Group enriched
Detected in many
lens:
104.5
vagus nerve:
161.0
RPP25
ENSSSCG00000001888
ENSG00000178718
Ribonuclease P and MRP subunit p25
Group enriched
Detected in many
brain:
29.7
lens:
15.9
SEMA5B
ENSSSCG00000011872
ENSG00000082684
Semaphorin 5B
Group enriched
Detected in many
lens:
33.7
thyroid gland:
31.1
SNX22
ENSSSCG00000037275
ENSG00000157734
Sorting nexin 22
Group enriched
Detected in many
brain:
30.6
lens:
8.0
male glands:
24.2
thyroid gland:
25.0
STX5
ENSSSCG00000026293
ENSG00000162236
Syntaxin-5
Group enriched
Detected in many
cartilage:
18.5
lens:
32.2
male glands:
55.3
TMEM117
ENSSSCG00000000801
ENSG00000139173
Transmembrane protein 117
Group enriched
Detected in many
brain:
38.1
lens:
64.5
TOX2
ENSSSCG00000022202
ENSG00000124191
TOX high mobility group box family member 2
Group enriched
Detected in many
brain:
14.4
lens:
50.9
lymphoid tissue:
36.0
pituitary gland:
19.8
TYRO3
ENSSSCG00000004744
ENSG00000092445
TYRO3 protein tyrosine kinase
Group enriched
Detected in many
brain:
22.4
lens:
65.8
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