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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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172 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000038816
ENSG00000160202,ENSG00000276076
Alpha-crystallin A chain
Tissue enriched
Detected in some
lens:
7670.7
BFSP1
ENSSSCG00000007084
ENSG00000125864
Beaded filament structural protein 1
Tissue enriched
Detected in some
lens:
933.0
GRIFIN
ENSSSCG00000007569
ENSG00000275572
Grifin
Tissue enriched
Detected in some
lens:
1138.2
na
ENSSSCG00000032898
Group enriched
Detected in some
lens:
137.3
testis:
88.6
GJA3
ENSSSCG00000036798
ENSG00000121743
Gap junction protein alpha 3
Tissue enriched
Detected in some
lens:
142.9
WNT7A
ENSSSCG00000039010
ENSG00000154764
Wnt family member 7A
Tissue enriched
Detected in some
lens:
157.5
na
ENSSSCG00000013536
ENSG00000130377
Group enriched
Detected in some
lens:
73.2
testis:
41.8
PRRT4
ENSSSCG00000037087
ENSG00000224940
Proline rich transmembrane protein 4
Tissue enriched
Detected in some
lens:
73.1
TPH2
ENSSSCG00000021122
ENSG00000139287
Tryptophan hydroxylase 2
Group enriched
Detected in some
brain:
49.5
lens:
19.0
na
ENSSSCG00000001035
Tissue enriched
Detected in some
lens:
35.5
na
ENSSSCG00000038612
Group enriched
Detected in some
cartilage:
3.2
lens:
3.2
salivary gland:
3.5
EXOC1L
ENSSSCG00000022882
ENSG00000250821
Exocyst complex component 1 like
Tissue enriched
Detected in some
lens:
31.7
na
ENSSSCG00000032618
Group enriched
Detected in some
lens:
2.5
testis:
9.6
ANKRD60
ENSSSCG00000007511
ENSG00000124227
Ankyrin repeat domain-containing protein 60
Group enriched
Detected in some
lens:
17.8
testis:
24.0
PITX3
ENSSSCG00000010578
ENSG00000107859
Paired like homeodomain 3
Tissue enriched
Detected in some
lens:
102.7
na
ENSSSCG00000007221
Group enriched
Detected in some
epididymis:
34.6
lens:
22.6
testis:
69.8
FOXE3
ENSSSCG00000003884
ENSG00000186790
Forkhead box E3
Tissue enriched
Detected in some
lens:
18.8
MGARP
ENSSSCG00000009062
ENSG00000137463
Protein MGARP
Group enriched
Detected in some
cornea:
99.5
lens:
163.1
na
ENSSSCG00000039248
Tissue enriched
Detected in some
lens:
35.5
C8orf46
ENSSSCG00000023848
ENSG00000169085
Chromosome 8 open reading frame 46
Group enriched
Detected in some
brain:
59.3
lens:
47.6
DNASE2B
ENSSSCG00000026532
ENSG00000137976
Deoxyribonuclease 2 beta
Tissue enriched
Detected in some
lens:
185.4
SMCO3
ENSSSCG00000000610
ENSG00000179256
Single-pass membrane protein with coiled-coil domains 3
Tissue enriched
Detected in some
lens:
117.7
na
ENSSSCG00000005430
Group enriched
Detected in some
heart:
13.4
lens:
13.2
SRD5A2
ENSSSCG00000008521
ENSG00000277893
3-oxo-5-alpha-steroid 4-dehydrogenase 2
Group enriched
Detected in some
epididymis:
30.8
lens:
74.3
na
ENSSSCG00000037138
Group enriched
Detected in some
aorta:
1.6
lens:
1.4
mouth:
2.3
skin:
5.5
testis:
4.4
na
ENSSSCG00000037959
Tissue enriched
Detected in some
lens:
93.1
TMEM40
ENSSSCG00000011583
ENSG00000088726
Transmembrane protein 40
Tissue enriched
Detected in some
lens:
145.5
DEFB1
ENSSSCG00000027555
Beta-defensin 1
Tissue enriched
Detected in some
lens:
244.7
ERICH5
ENSSSCG00000006080
ENSG00000177459
Glutamate rich 5
Group enriched
Detected in some
cornea:
89.6
lens:
86.8
na
ENSSSCG00000031085
Group enriched
Detected in some
lens:
6.3
lymphoid tissue:
13.9
na
ENSSSCG00000039280
Tissue enriched
Detected in some
lens:
14.3
PMFBP1
ENSSSCG00000002747
ENSG00000118557
Polyamine modulated factor 1 binding protein 1
Group enriched
Detected in some
lens:
16.5
testis:
56.6
R3HDML
ENSSSCG00000007370
ENSG00000101074
R3H domain containing like
Tissue enriched
Detected in some
lens:
65.8
SLC24A2
ENSSSCG00000005167
ENSG00000155886
Sodium/potassium/calcium exchanger 2
Group enriched
Detected in some
brain:
49.8
epididymis:
19.6
lens:
12.6
pineal gland:
19.5
retina:
20.6
ADCY1
ENSSSCG00000016726
ENSG00000164742
Adenylate cyclase 1
Group enriched
Detected in some
brain:
51.5
lens:
21.6
retina:
23.4
na
ENSSSCG00000024765
Tissue enriched
Detected in some
lens:
38.3
na
ENSSSCG00000035171
Group enriched
Detected in some
lens:
3.5
lymphoid tissue:
13.8
NKAIN4
ENSSSCG00000036544
ENSG00000101198
Sodium/potassium transporting ATPase interacting 4
Group enriched
Detected in some
brain:
6.4
epididymis:
14.3
lens:
9.7
HMX1
ENSSSCG00000008720
ENSG00000215612
H6 family homeobox 1
Tissue enriched
Detected in some
lens:
39.2
na
ENSSSCG00000037247
Tissue enriched
Detected in some
lens:
10.4
na
ENSSSCG00000040757
Tissue enriched
Detected in some
lens:
20.7
DLGAP2
ENSSSCG00000015746
ENSG00000198010
Disks large-associated protein 2
Group enriched
Detected in some
brain:
16.6
lens:
10.7
LRRC30
ENSSSCG00000023672
ENSG00000206422
Leucine rich repeat containing 30
Group enriched
Detected in some
lens:
12.9
male glands:
9.0
skeletal muscle:
20.7
MYL10
ENSSSCG00000007680
ENSG00000106436
Myosin light chain 10
Group enriched
Detected in some
cartilage:
8.6
lens:
21.4
synovial tissue:
7.9
na
ENSSSCG00000032503
Group enriched
Detected in some
epididymis:
14.4
heart:
14.6
lens:
19.1
lymphoid tissue:
5.6
upper respiratory system:
6.5
na
ENSSSCG00000039162
Group enriched
Detected in some
lens:
1.7
lymphoid tissue:
5.4
na
ENSSSCG00000039385
Group enriched
Detected in some
adipose tissue:
2.2
brain:
2.0
breast:
4.4
lens:
1.3
na
ENSSSCG00000040389
Group enriched
Detected in some
epididymis:
3.6
lens:
3.0
testis:
9.6
APBA2
ENSSSCG00000004849
ENSG00000034053
Amyloid beta precursor protein binding family A member 2
Group enriched
Detected in some
brain:
28.0
epididymis:
34.3
lens:
39.2
pineal gland:
13.5
COL4A4
ENSSSCG00000016244
ENSG00000081052
Collagen type IV alpha 4 chain
Group enriched
Detected in some
cornea:
48.5
lens:
82.9
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