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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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91 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000032990
Tissue enriched
Detected in some
small intestine:
59.1
na
ENSSSCG00000033382
ENSG00000215182
Tissue enriched
Detected in some
stomach:
756.8
na
ENSSSCG00000033414
Tissue enriched
Detected in single
small intestine:
64.8
na
ENSSSCG00000033716
Tissue enriched
Detected in some
small intestine:
32.5
na
ENSSSCG00000034731
ENSG00000160182
Tissue enriched
Detected in many
stomach:
396.2
na
ENSSSCG00000035053
Elafin precursor
Tissue enriched
Detected in some
large intestine:
423.1
na
ENSSSCG00000035391
Tissue enriched
Detected in many
stomach:
38.0
na
ENSSSCG00000036073
Tissue enriched
Detected in single
stomach:
4.2
na
ENSSSCG00000036637
Tissue enriched
Detected in single
stomach:
2.9
na
ENSSSCG00000036689
Tissue enriched
Detected in some
stomach:
18.6
na
ENSSSCG00000037259
Tissue enriched
Detected in some
small intestine:
92.2
na
ENSSSCG00000038419
Tissue enriched
Detected in all
large intestine:
74.2
na
ENSSSCG00000038570
Tissue enriched
Detected in some
small intestine:
32.5
na
ENSSSCG00000038571
Tissue enriched
Detected in single
stomach:
1.1
na
ENSSSCG00000038606
Tissue enriched
Detected in some
large intestine:
33.9
na
ENSSSCG00000038889
Tissue enriched
Detected in single
small intestine:
17.5
na
ENSSSCG00000038892
Tissue enriched
Detected in some
small intestine:
45.4
na
ENSSSCG00000038984
Tissue enriched
Detected in single
small intestine:
25.2
na
ENSSSCG00000039394
Tissue enriched
Detected in single
small intestine:
24.3
na
ENSSSCG00000039502
Tissue enriched
Detected in some
small intestine:
51.2
na
ENSSSCG00000040090
Tissue enriched
Detected in some
stomach:
10.0
na
ENSSSCG00000040197
Tissue enriched
Detected in single
small intestine:
75.8
na
ENSSSCG00000040244
Tissue enriched
Detected in single
large intestine:
1.2
NAALADL1
ENSSSCG00000013010
ENSG00000168060
N-acetylated alpha-linked acidic dipeptidase like 1
Tissue enriched
Detected in all
small intestine:
77.2
NLRP6
ENSSSCG00000014561
ENSG00000174885
NLR family pyrin domain containing 6
Tissue enriched
Detected in some
small intestine:
36.9
NOX1
ENSSSCG00000012485
ENSG00000007952
NADPH oxidase 1
Tissue enriched
Detected in some
large intestine:
55.8
OTOP3
ENSSSCG00000017220
ENSG00000182938
Otopetrin 3
Tissue enriched
Detected in some
small intestine:
25.5
PGA5
ENSSSCG00000013092
ENSG00000229183,ENSG00000229859,ENSG00000256713
Pepsin A
Tissue enriched
Detected in single
stomach:
413.6
PGC
ENSSSCG00000001625
ENSG00000096088
Progastricsin
Tissue enriched
Detected in some
stomach:
240.5
PIRT
ENSSSCG00000037179
ENSG00000233670
Phosphoinositide interacting regulator of transient receptor potential channels
Tissue enriched
Detected in some
stomach:
38.5
PNLIPRP2
ENSSSCG00000010660
Pancreatic lipase-related protein 2 precursor
Tissue enriched
Detected in some
stomach:
238.7
PSCA
ENSSSCG00000035372
ENSG00000167653
Prostate stem cell antigen
Tissue enriched
Detected in some
stomach:
478.2
RBP2
ENSSSCG00000011663
ENSG00000114113
Retinol-binding protein 2
Tissue enriched
Detected in single
small intestine:
62.6
REG4
ENSSSCG00000040947
ENSG00000134193
Regenerating islet-derived protein 4 precursor
Tissue enriched
Detected in many
large intestine:
72.2
S100G
ENSSSCG00000012147
ENSG00000169906
Protein S100-G Protein S100-G, minor isoform
Tissue enriched
Detected in many
small intestine:
238.1
SI
ENSSSCG00000011735
ENSG00000090402
Sucrase-isomaltase
Tissue enriched
Detected in some
small intestine:
104.8
SLC10A2
ENSSSCG00000026317
ENSG00000125255
Ileal sodium/bile acid cotransporter
Tissue enriched
Detected in some
small intestine:
70.7
SPINK1
ENSSSCG00000034511
ENSG00000164266
Serine peptidase inhibitor, Kazal type 1
Tissue enriched
Detected in some
small intestine:
72.4
TGM3
ENSSSCG00000026043
ENSG00000125780
Transglutaminase 3
Tissue enriched
Detected in some
stomach:
124.6
TMPRSS15
ENSSSCG00000012019
ENSG00000154646
Enteropeptidase proprotein
Tissue enriched
Detected in some
small intestine:
51.5
TMPRSS3
ENSSSCG00000022568
ENSG00000160183
Transmembrane serine protease 3
Tissue enriched
Detected in some
stomach:
21.2
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