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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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131 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PPP1R27
ENSSSCG00000037039
ENSG00000182676
Protein phosphatase 1 regulatory subunit 27
Tissue enriched
Detected in some
skeletal muscle:
157.3
PPP1R3A
ENSSSCG00000016640
ENSG00000154415
Protein phosphatase 1 regulatory subunit 3A
Tissue enriched
Detected in some
skeletal muscle:
132.8
PTDSS1
ENSSSCG00000006089
ENSG00000156471
Phosphatidylserine synthase 1
Tissue enriched
Detected in all
heart:
138.5
PYGM
ENSSSCG00000013022
ENSG00000068976
Glycogen phosphorylase, muscle associated
Tissue enriched
Detected in many
skeletal muscle:
418.1
RBM20
ENSSSCG00000010626
ENSG00000203867
RNA binding motif protein 20
Tissue enriched
Detected in some
heart:
47.3
RNF207
ENSSSCG00000003368
ENSG00000158286
Ring finger protein 207
Tissue enriched
Detected in some
heart:
44.2
RYR2
ENSSSCG00000010142
ENSG00000198626
Ryanodine receptor 2
Tissue enriched
Detected in many
heart:
143.0
SCN4A
ENSSSCG00000017282
ENSG00000007314
Sodium voltage-gated channel alpha subunit 4
Tissue enriched
Detected in some
skeletal muscle:
63.3
SCN5A
ENSSSCG00000011259
ENSG00000183873
Sodium voltage-gated channel alpha subunit 5
Tissue enriched
Detected in some
heart:
45.8
SEMA6C
ENSSSCG00000006635
ENSG00000143434
Semaphorin 6C
Tissue enriched
Detected in many
skeletal muscle:
81.1
SLN
ENSSSCG00000029651
ENSG00000170290
Sarcolipin
Tissue enriched
Detected in some
skeletal muscle:
333.6
STAC3
ENSSSCG00000029471
ENSG00000185482
SH3 and cysteine rich domain 3
Tissue enriched
Detected in some
skeletal muscle:
115.0
SYNM
ENSSSCG00000035223
ENSG00000182253
Synemin
Tissue enriched
Detected in many
smooth muscle:
222.0
SYPL2
ENSSSCG00000006829
ENSG00000143028
Synaptophysin like 2
Tissue enriched
Detected in some
skeletal muscle:
108.7
TACR2
ENSSSCG00000010254
ENSG00000075073
Tachykinin receptor 2
Tissue enriched
Detected in all
smooth muscle:
52.1
TBX20
ENSSSCG00000016662
ENSG00000164532
T-box 20
Tissue enriched
Detected in some
heart:
66.9
TBX5
ENSSSCG00000009867
ENSG00000089225
T-box 5
Tissue enriched
Detected in some
heart:
65.3
TMEM38A
ENSSSCG00000013864
ENSG00000072954
Transmembrane protein 38A
Tissue enriched
Detected in many
skeletal muscle:
129.5
TMOD4
ENSSSCG00000006631
ENSG00000163157
Tropomodulin-4
Tissue enriched
Detected in some
skeletal muscle:
171.0
TNNC2
ENSSSCG00000007424
ENSG00000101470
Troponin C, skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
688.9
TNNI1
ENSSSCG00000024061
ENSG00000159173
Troponin I, slow skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
417.5
TNNI2
ENSSSCG00000033260
ENSG00000130598
Troponin I, fast skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
579.8
TNNI3
ENSSSCG00000024505
ENSG00000129991
Troponin I, cardiac muscle
Tissue enriched
Detected in some
heart:
453.3
TNNT1
ENSSSCG00000025353
ENSG00000105048
Troponin T, slow skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
407.0
TNNT2
ENSSSCG00000023031
ENSG00000118194
Troponin T, cardiac muscle isoform 6
Tissue enriched
Detected in some
heart:
578.7
TNNT3
ENSSSCG00000031903
ENSG00000130595
Troponin T, fast skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
638.7
TPM2
ENSSSCG00000005316
ENSG00000198467
Tropomyosin beta chain
Tissue enriched
Detected in many
skeletal muscle:
765.9
TPM3
ENSSSCG00000006556
ENSG00000143549
Tropomyosin alpha-3 chain
Tissue enriched
Detected in all
skeletal muscle:
273.0
TRIM72
ENSSSCG00000007757
ENSG00000177238
Tripartite motif containing 72
Tissue enriched
Detected in all
skeletal muscle:
83.8
VGLL2
ENSSSCG00000004255
ENSG00000170162
Vestigial like family member 2
Tissue enriched
Detected in some
skeletal muscle:
94.8
XIRP2
ENSSSCG00000015917
ENSG00000163092
Xin actin binding repeat containing 2
Tissue enriched
Detected in some
skeletal muscle:
162.8
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