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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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246 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CROT
ENSSSCG00000015391
ENSG00000005469
Peroxisomal carnitine O-octanoyltransferase
Tissue enriched
Detected in all
liver:
89.6
CYP1A1
ENSSSCG00000001906
ENSG00000140465
Cytochrome P450 1A1
Tissue enriched
Detected in many
liver:
54.7
CYP1A2
ENSSSCG00000001901
ENSG00000140505
Cytochrome P450 1A2
Tissue enriched
Detected in some
liver:
135.1
CYP27A1
ENSSSCG00000016199
ENSG00000135929
Sterol 26-hydroxylase, mitochondrial
Tissue enriched
Detected in many
liver:
139.3
CYP2C49
ENSSSCG00000010488
Cytochrome P450 2C49 precursor
Tissue enriched
Detected in some
liver:
115.3
CYP2E1
ENSSSCG00000010780
ENSG00000130649
Cytochrome P450 2E1
Tissue enriched
Detected in some
liver:
200.9
CYP3A39
ENSSSCG00000023320
Sus scrofa cytochrome P450 3A39 (CYP3A39), mRNA.
Tissue enriched
Detected in many
liver:
376.2
CYP7A1
ENSSSCG00000006238
ENSG00000167910
Cholesterol 7-alpha-monooxygenase
Tissue enriched
Detected in many
liver:
82.5
DPYS
ENSSSCG00000006040
ENSG00000147647
Dihydropyrimidinase
Tissue enriched
Detected in some
liver:
91.5
ETNK2
ENSSSCG00000015276
ENSG00000143845
Ethanolamine kinase 2
Tissue enriched
Detected in many
liver:
106.4
F10
ENSSSCG00000009558
ENSG00000126218
Coagulation factor X precursor
Tissue enriched
Detected in many
liver:
84.8
F12
ENSSSCG00000031274
ENSG00000131187
Coagulation factor XII precursor
Tissue enriched
Detected in many
liver:
125.1
F13B
ENSSSCG00000023301
ENSG00000143278
Coagulation factor XIII B chain
Tissue enriched
Detected in all
liver:
46.6
F2
ENSSSCG00000013252
ENSG00000180210
Prothrombin precursor
Tissue enriched
Detected in some
liver:
165.9
F7
ENSSSCG00000029503
ENSG00000057593
Coagulation factor VII precursor
Tissue enriched
Detected in many
liver:
44.1
F9
ENSSSCG00000012711
ENSG00000101981
Coagulation factor IX
Tissue enriched
Detected in some
liver:
146.3
FETUB
ENSSSCG00000011800
ENSG00000090512
Fetuin B
Tissue enriched
Detected in some
liver:
101.9
FGB
ENSSSCG00000008997
ENSG00000171564
Fibrinogen beta chain precursor
Tissue enriched
Detected in some
liver:
413.6
FGG
ENSSSCG00000024314
ENSG00000171557
Fibrinogen gamma chain precursor
Tissue enriched
Detected in some
liver:
270.2
FGL1
ENSSSCG00000035335
ENSG00000104760
Fibrinogen like 1
Tissue enriched
Detected in some
liver:
105.5
FMO1
ENSSSCG00000015268
ENSG00000010932
Dimethylaniline monooxygenase [N-oxide-forming] 1
Tissue enriched
Detected in many
liver:
195.8
GAMT
ENSSSCG00000023142
ENSG00000130005
Guanidinoacetate N-methyltransferase
Tissue enriched
Detected in many
liver:
108.3
GC
ENSSSCG00000027609
ENSG00000145321
GC, vitamin D binding protein
Tissue enriched
Detected in some
liver:
361.7
GCAT
ENSSSCG00000029945
ENSG00000100116
Glycine C-acetyltransferase
Tissue enriched
Detected in many
liver:
49.9
GCGR
ENSSSCG00000034891
ENSG00000215644
Glucagon receptor
Tissue enriched
Detected in some
liver:
135.9
GDF2
ENSSSCG00000010375
ENSG00000263761
Growth differentiation factor 2
Tissue enriched
Detected in some
liver:
16.7
GLS2
ENSSSCG00000000401
ENSG00000135423
Glutaminase 2
Tissue enriched
Detected in many
liver:
63.9
GNMT
ENSSSCG00000033214
ENSG00000124713
Glycine N-methyltransferase
Tissue enriched
Detected in many
liver:
57.7
GPBAR1
ENSSSCG00000022483
ENSG00000179921
G protein-coupled bile acid receptor 1
Tissue enriched
Detected in some
gallbladder:
33.1
GPR156
ENSSSCG00000011888
ENSG00000175697
G protein-coupled receptor 156
Tissue enriched
Detected in many
liver:
46.7
GYS2
ENSSSCG00000000577
ENSG00000111713
Glycogen
Tissue enriched
Detected in many
liver:
99.1
HABP2
ENSSSCG00000010639
ENSG00000148702
Hyaluronan-binding protein 2
Tissue enriched
Detected in some
liver:
108.9
HAL
ENSSSCG00000000892
ENSG00000084110
Histidine ammonia-lyase
Tissue enriched
Detected in all
liver:
49.8
HAMP
ENSSSCG00000035436
ENSG00000105697
Hepcidin
Tissue enriched
Detected in some
liver:
71.2
HGD
ENSSSCG00000021227
ENSG00000113924
Homogentisate 1,2-dioxygenase
Tissue enriched
Detected in many
liver:
91.2
HGFAC
ENSSSCG00000008700
ENSG00000109758
HGF activator
Tissue enriched
Detected in many
liver:
93.5
HPD
ENSSSCG00000009805
ENSG00000158104
4-hydroxyphenylpyruvate dioxygenase
Tissue enriched
Detected in some
liver:
217.9
HPX
ENSSSCG00000014626
ENSG00000110169
Hemopexin precursor
Tissue enriched
Detected in some
liver:
339.3
HRG
ENSSSCG00000011801
ENSG00000113905
Histidine-rich glycoprotein precursor
Tissue enriched
Detected in some
liver:
413.6
IGFALS
ENSSSCG00000008013
ENSG00000099769
Insulin-like growth factor-binding protein complex acid labile subunit precursor
Tissue enriched
Detected in many
liver:
47.0
IGFBP1
ENSSSCG00000016728
ENSG00000146678
Insulin-like growth factor-binding protein 1 precursor
Tissue enriched
Detected in some
liver:
154.0
INHBC
ENSSSCG00000037446
ENSG00000175189
Inhibin beta C subunit
Tissue enriched
Detected in single
liver:
53.0
INHBE
ENSSSCG00000000442
ENSG00000139269
Inhibin beta E subunit
Tissue enriched
Detected in single
liver:
28.7
INMT
ENSSSCG00000016676
Indolethylamine N-methyltransferase
Tissue enriched
Detected in many
liver:
77.9
ITIH1
ENSSSCG00000011450
ENSG00000055957
Inter-alpha-trypsin inhibitor heavy chain 1
Tissue enriched
Detected in all
liver:
234.9
ITIH2
ENSSSCG00000011128
ENSG00000151655
Inter-alpha-trypsin inhibitor heavy chain H2 precursor
Tissue enriched
Detected in some
liver:
217.5
ITIH3
ENSSSCG00000011451
ENSG00000162267
Inter-alpha-trypsin inhibitor heavy chain H3 precursor
Tissue enriched
Detected in many
liver:
105.3
KLKB1
ENSSSCG00000015799
ENSG00000164344
Plasma kallikrein
Tissue enriched
Detected in many
liver:
71.4
KNG1
ENSSSCG00000011802
ENSG00000113889
Kininogen 1
Tissue enriched
Detected in many
liver:
179.2
LECT2
ENSSSCG00000014315
ENSG00000145826
Leukocyte cell derived chemotaxin 2
Tissue enriched
Detected in some
liver:
78.6
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