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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
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Subclass
Class
Biological process
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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115 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DEFB125
ENSSSCG00000007217
ENSG00000178591
Beta-defensin 125 precursor
Tissue enriched
Detected in single
epididymis:
135.8
PATE1
ENSSSCG00000040952
ENSG00000171053
Prostate and testis expressed 1
Tissue enriched
Detected in single
epididymis:
99.3
DEFB129
ENSSSCG00000007218
ENSG00000125903
Beta-defensin 129 precursor
Tissue enriched
Detected in single
epididymis:
327.3
MAN2B2
ENSSSCG00000027178
ENSG00000013288
Epididymis-specific alpha-mannosidase precursor
Tissue enriched
Detected in single
epididymis:
415.8
na
ENSSSCG00000014544
Tissue enriched
Detected in single
epididymis:
55.3
na
ENSSSCG00000034764
Tissue enriched
Detected in some
epididymis:
170.5
CST11
ENSSSCG00000007122
ENSG00000125831
Cystatin 11
Tissue enriched
Detected in some
epididymis:
311.5
SPAG11
ENSSSCG00000029743
Sperm associated antigen 11
Tissue enriched
Detected in some
epididymis:
234.6
na
ENSSSCG00000030743
Tissue enriched
Detected in some
epididymis:
146.3
DEFB128
ENSSSCG00000034080
ENSG00000185982
Defensin beta 128
Tissue enriched
Detected in some
epididymis:
252.3
DEFB116
ENSSSCG00000007215
ENSG00000215545
Defensin beta 116
Tissue enriched
Detected in some
epididymis:
104.3
na
ENSSSCG00000036195
Tissue enriched
Detected in single
epididymis:
73.1
DEFB127
ENSSSCG00000035759
ENSG00000088782
Defensin beta 127
Tissue enriched
Detected in some
epididymis:
106.9
ELSPBP1
ENSSSCG00000003125
ENSG00000169393
Epididymal sperm-binding protein 1 precursor
Tissue enriched
Detected in some
epididymis:
206.4
na
ENSSSCG00000037919
Tissue enriched
Detected in single
epididymis:
56.7
na
ENSSSCG00000032784
ENSG00000186562,ENSG00000186599
Tissue enriched
Detected in many
epididymis:
156.1
na
ENSSSCG00000040894
ENSG00000184276
Tissue enriched
Detected in single
epididymis:
21.9
na
ENSSSCG00000006479
ENSG00000187862
Tissue enriched
Detected in some
epididymis:
62.1
TEDDM1
ENSSSCG00000015546
ENSG00000203730
Transmembrane epididymal protein 1
Tissue enriched
Detected in some
epididymis:
58.3
NPC2
ENSSSCG00000002366
ENSG00000119655
Epididymal secretory protein E1
Tissue enriched
Detected in many
epididymis:
615.2
ADAM7
ENSSSCG00000009646
ENSG00000069206
ADAM metallopeptidase domain 7
Tissue enriched
Detected in many
epididymis:
248.0
na
ENSSSCG00000032248
Tissue enriched
Detected in some
epididymis:
92.1
na
ENSSSCG00000038206
Tissue enriched
Detected in single
epididymis:
16.7
na
ENSSSCG00000039995
ENSG00000176782,ENSG00000177023
Tissue enriched
Detected in many
epididymis:
101.9
WFDC9
ENSSSCG00000007408
ENSG00000180205
WAP four-disulfide core domain 9
Tissue enriched
Detected in some
epididymis:
132.7
LCN10
ENSSSCG00000005836
ENSG00000187922
Lipocalin 10
Tissue enriched
Detected in some
epididymis:
55.4
na
ENSSSCG00000039240
ENSG00000188655
Tissue enriched
Detected in all
epididymis:
85.9
VPS26B
ENSSSCG00000028123
Vacuolar protein sorting-associated protein 26B
Tissue enriched
Detected in all
epididymis:
263.1
CLDN25
ENSSSCG00000015051
ENSG00000228607
Claudin 25
Tissue enriched
Detected in some
epididymis:
30.6
GALNT8
ENSSSCG00000000718
ENSG00000130035
Polypeptide N-acetylgalactosaminyltransferase 8
Tissue enriched
Detected in some
epididymis:
92.8
na
ENSSSCG00000033810
Tissue enriched
Detected in single
epididymis:
11.5
HOXB1
ENSSSCG00000017532
ENSG00000120094
Homeobox B1
Tissue enriched
Detected in single
epididymis:
4.7
na
ENSSSCG00000005834
Tissue enriched
Detected in some
epididymis:
378.4
na
ENSSSCG00000033028
Tissue enriched
Detected in single
epididymis:
16.1
na
ENSSSCG00000034077
Tissue enriched
Detected in many
epididymis:
84.7
GPX5
ENSSSCG00000001214
ENSG00000224586
Epididymal secretory glutathione peroxidase
Tissue enriched
Detected in many
epididymis:
80.6
na
ENSSSCG00000034490
ENSG00000214642
Tissue enriched
Detected in single
epididymis:
10.1
na
ENSSSCG00000034721
Tissue enriched
Detected in some
epididymis:
200.6
RNASE13
ENSSSCG00000023519
ENSG00000206150
Ribonuclease A family member 13 (inactive)
Tissue enriched
Detected in some
epididymis:
83.0
na
ENSSSCG00000033795
Tissue enriched
Detected in single
epididymis:
6.4
PATE3
ENSSSCG00000015221
ENSG00000236027
Prostate and testis expressed 3
Tissue enriched
Detected in some
epididymis:
75.4
na
ENSSSCG00000036170
Tissue enriched
Detected in some
epididymis:
31.8
na
ENSSSCG00000039145
Tissue enriched
Detected in some
epididymis:
242.1
na
ENSSSCG00000033361
Tissue enriched
Detected in some
epididymis:
18.0
na
ENSSSCG00000035685
Tissue enriched
Detected in single
epididymis:
11.5
na
ENSSSCG00000039083
Tissue enriched
Detected in single
epididymis:
6.5
DEFB114
ENSSSCG00000001741
ENSG00000177684
Beta-defensin 114 precursor
Tissue enriched
Detected in some
epididymis:
18.0
na
ENSSSCG00000032540
Tissue enriched
Detected in some
epididymis:
16.7
RIPPLY1
ENSSSCG00000033276
ENSG00000147223
Ripply transcriptional repressor 1
Tissue enriched
Detected in many
epididymis:
65.9
na
ENSSSCG00000005835
ENSG00000267206
Tissue enriched
Detected in some
epididymis:
30.2
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