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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Biological process
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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149 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCA12
ENSSSCG00000034282
ENSG00000144452
ATP binding cassette subfamily A member 12
Tissue enhanced
Detected in some
epididymis:
8.7
large intestine:
17.5
skin:
26.0
testis:
6.2
AWAT2
ENSSSCG00000012384
ENSG00000147160
Acyl-CoA wax alcohol acyltransferase 2
Tissue enhanced
Detected in some
epididymis:
21.1
thyroid gland:
8.6
BEND4
ENSSSCG00000008802
ENSG00000188848
BEN domain containing 4
Tissue enhanced
Detected in some
cartilage:
50.4
epididymis:
20.3
kidney:
12.3
male glands:
17.5
BEX5
ENSSSCG00000012514
ENSG00000184515
Brain expressed X-linked 5
Tissue enhanced
Detected in some
brain:
15.5
epididymis:
16.7
pineal gland:
13.7
pituitary gland:
42.9
CAPS
ENSSSCG00000013532
ENSG00000105519
Calcyphosin isoform c
Tissue enhanced
Detected in some
choroid plexus:
28.3
epididymis:
42.8
lens:
97.7
CCR3
ENSSSCG00000024408
ENSG00000183625
C-C chemokine receptor type 3
Tissue enhanced
Detected in some
epididymis:
5.0
lymphoid tissue:
6.0
CDH8
ENSSSCG00000040687
ENSG00000150394
Cadherin 8
Tissue enhanced
Detected in some
brain:
27.5
epididymis:
29.0
pineal gland:
20.2
CDH9
ENSSSCG00000020845
ENSG00000113100
Cadherin 9
Tissue enhanced
Detected in some
brain:
18.1
epididymis:
5.9
CEP72
ENSSSCG00000031800
ENSG00000112877
Centrosomal protein 72
Tissue enhanced
Detected in some
epididymis:
8.9
lens:
12.3
stomach:
13.2
testis:
28.0
COL20A1
ENSSSCG00000037260
ENSG00000101203
Collagen type XX alpha 1 chain
Tissue enhanced
Detected in some
ductus deferens:
12.1
epididymis:
10.3
DCC
ENSSSCG00000040836
ENSG00000187323
DCC netrin 1 receptor
Tissue enhanced
Detected in some
brain:
20.5
epididymis:
22.8
male glands:
8.5
DISP3
ENSSSCG00000003417
ENSG00000204624
Dispatched RND transporter family member 3
Tissue enhanced
Detected in some
brain:
13.0
epididymis:
5.6
pineal gland:
13.9
retina:
5.4
DNAH7
ENSSSCG00000032814
ENSG00000118997
Dynein axonemal heavy chain 7
Tissue enhanced
Detected in some
epididymis:
16.1
fallopian tube:
27.7
testis:
17.7
upper respiratory system:
16.9
FAM3D
ENSSSCG00000025529
ENSG00000198643
Family with sequence similarity 3 member D
Tissue enhanced
Detected in some
epididymis:
46.8
large intestine:
56.0
small intestine:
29.8
stomach:
39.6
GABRB1
ENSSSCG00000035621
ENSG00000163288
Gamma-aminobutyric acid type A receptor beta1 subunit
Tissue enhanced
Detected in some
brain:
25.8
epididymis:
11.7
GP1BA
ENSSSCG00000017908
ENSG00000185245
Glycoprotein Ib platelet alpha subunit
Tissue enhanced
Detected in some
epididymis:
9.6
fallopian tube:
11.7
thyroid gland:
37.5
HELT
ENSSSCG00000038390
ENSG00000187821
Helt bHLH transcription factor
Tissue enhanced
Detected in some
ductus deferens:
4.9
endometrium:
4.1
epididymis:
19.1
HOXB9
ENSSSCG00000039193
ENSG00000170689
Homeobox B9
Tissue enhanced
Detected in some
epididymis:
24.0
kidney:
24.0
large intestine:
28.2
male glands:
20.6
IP6K3
ENSSSCG00000039272
ENSG00000161896
Inositol hexakisphosphate kinase 3
Tissue enhanced
Detected in some
epididymis:
19.5
lens:
9.1
skeletal muscle:
40.9
KPNA7
ENSSSCG00000007607
ENSG00000185467
Importin subunit alpha-8
Tissue enhanced
Detected in some
epididymis:
8.6
LHFPL5
ENSSSCG00000001553
ENSG00000197753
LHFPL tetraspan subfamily member 5
Tissue enhanced
Detected in some
brain:
8.5
epididymis:
9.7
pineal gland:
4.3
LRRC38
ENSSSCG00000003449
ENSG00000162494
Leucine rich repeat containing 38
Tissue enhanced
Detected in some
brain:
10.0
cartilage:
8.6
epididymis:
5.9
heart:
7.6
MEIKIN
ENSSSCG00000014271
ENSG00000239642
Meiotic kinetochore factor
Tissue enhanced
Detected in some
adrenal gland:
32.5
epididymis:
18.0
retina:
19.7
testis:
15.9
na
ENSSSCG00000001196
Tissue enhanced
Detected in some
epididymis:
3.9
testis:
6.8
na
ENSSSCG00000002625
Tissue enhanced
Detected in some
endometrium:
1.1
epididymis:
4.8
upper respiratory system:
1.2
na
ENSSSCG00000003367
Tissue enhanced
Detected in some
epididymis:
2.9
heart:
2.6
male glands:
4.0
na
ENSSSCG00000003703
Tissue enhanced
Detected in some
epididymis:
4.4
ovary:
7.4
na
ENSSSCG00000004187
Tissue enhanced
Detected in some
brain:
1.2
epididymis:
1.7
lung:
1.7
testis:
2.4
na
ENSSSCG00000008671
Tissue enhanced
Detected in some
brain:
6.2
epididymis:
2.7
testis:
1.1
na
ENSSSCG00000008850
Tissue enhanced
Detected in some
epididymis:
3.4
lens:
1.9
na
ENSSSCG00000009537
ENSG00000204442
Tissue enhanced
Detected in some
brain:
20.7
epididymis:
13.1
pineal gland:
15.5
pituitary gland:
18.5
retina:
15.2
na
ENSSSCG00000010546
Cytochrome P450 2C33
Tissue enhanced
Detected in some
cartilage:
96.1
epididymis:
86.8
kidney:
142.2
liver:
421.6
na
ENSSSCG00000010549
Tissue enhanced
Detected in some
cartilage:
57.9
epididymis:
96.8
kidney:
86.4
liver:
191.1
na
ENSSSCG00000011140
Tissue enhanced
Detected in some
epididymis:
5.7
gallbladder:
8.8
male glands:
5.0
salivary gland:
4.2
na
ENSSSCG00000012645
Tissue enhanced
Detected in some
brain:
5.2
ductus deferens:
15.6
epididymis:
17.3
male glands:
6.0
na
ENSSSCG00000014456
ENSG00000279761
Tissue enhanced
Detected in some
epididymis:
1.3
male glands:
1.7
penis:
1.3
skin:
2.3
testis:
3.3
na
ENSSSCG00000014896
Tissue enhanced
Detected in some
brain:
3.9
epididymis:
9.6
gallbladder:
4.9
na
ENSSSCG00000015179
Tissue enhanced
Detected in some
epididymis:
3.4
testis:
3.7
na
ENSSSCG00000016507
Tissue enhanced
Detected in some
epididymis:
4.3
testis:
4.6
na
ENSSSCG00000016881
Tissue enhanced
Detected in some
epididymis:
3.0
kidney:
1.2
testis:
2.3
na
ENSSSCG00000020838
Tissue enhanced
Detected in some
epididymis:
3.1
male glands:
3.5
mesothelial tissue:
3.6
skin:
3.0
na
ENSSSCG00000021093
ENSG00000179133
Tissue enhanced
Detected in some
epididymis:
6.2
fallopian tube:
7.9
testis:
14.3
na
ENSSSCG00000021699
ENSG00000285025
Tissue enhanced
Detected in some
epididymis:
4.6
heart:
4.6
mesothelial tissue:
4.2
testis:
5.8
na
ENSSSCG00000023516
Tissue enhanced
Detected in some
epididymis:
4.7
testis:
5.0
na
ENSSSCG00000024129
ENSG00000186377
Tissue enhanced
Detected in some
brain:
10.9
epididymis:
20.5
na
ENSSSCG00000026287
ENSG00000171481
Tissue enhanced
Detected in some
epididymis:
8.1
kidney:
4.8
male glands:
29.3
na
ENSSSCG00000026476
ENSG00000186103
Tissue enhanced
Detected in some
breast:
8.2
epididymis:
10.6
na
ENSSSCG00000027025
Tissue enhanced
Detected in some
epididymis:
2.3
mouth:
3.6
skin:
9.2
na
ENSSSCG00000027851
Tissue enhanced
Detected in some
epididymis:
1.5
lymphoid tissue:
2.1
small intestine:
4.1
na
ENSSSCG00000028136
Tissue enhanced
Detected in some
epididymis:
5.8
testis:
3.5
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