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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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93 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CSTL1
ENSSSCG00000007121
ENSG00000125823
Cystatin like 1
Group enriched
Detected in some
epididymis:
24.5
testis:
41.2
MLN
ENSSSCG00000001521
ENSG00000096395
Promotilin precursor
Group enriched
Detected in some
epididymis:
31.1
small intestine:
39.2
WFDC10A
ENSSSCG00000029121
ENSG00000180305
WAP four-disulfide core domain 10A
Group enriched
Detected in some
ductus deferens:
130.1
epididymis:
430.8
na
ENSSSCG00000040753
Group enriched
Detected in some
ductus deferens:
93.6
epididymis:
115.5
na
ENSSSCG00000031069
ENSG00000214643
Group enriched
Detected in some
ductus deferens:
15.8
epididymis:
42.7
na
ENSSSCG00000036460
ENSG00000180872
Group enriched
Detected in some
ductus deferens:
69.5
epididymis:
143.5
OTUD6A
ENSSSCG00000012383
ENSG00000189401
OTU deubiquitinase 6A
Group enriched
Detected in some
epididymis:
29.9
testis:
25.6
na
ENSSSCG00000038515
Group enriched
Detected in some
ductus deferens:
210.7
epididymis:
182.1
SYNDIG1L
ENSSSCG00000025000
ENSG00000183379
Synapse differentiation inducing 1 like
Group enriched
Detected in some
brain:
30.3
epididymis:
91.3
na
ENSSSCG00000005307
Group enriched
Detected in some
epididymis:
13.6
testis:
36.6
ZAN
ENSSSCG00000007674
ENSG00000146839
Zonadhesin precursor
Group enriched
Detected in some
epididymis:
14.3
testis:
43.0
VRTN
ENSSSCG00000002361
ENSG00000133980
Vertnin
Group enriched
Detected in some
adrenal gland:
6.1
epididymis:
1.7
ovary:
2.3
na
ENSSSCG00000007221
Group enriched
Detected in some
epididymis:
34.6
lens:
22.6
testis:
69.8
na
ENSSSCG00000039857
ENSG00000164032
Group enriched
Detected in some
epididymis:
1.9
retina:
1.4
na
ENSSSCG00000031718
Group enriched
Detected in some
epididymis:
1.0
testis:
1.6
ABCB5
ENSSSCG00000015377
ENSG00000004846
ATP binding cassette subfamily B member 5
Group enriched
Detected in some
ductus deferens:
17.2
epididymis:
64.3
na
ENSSSCG00000038596
Group enriched
Detected in some
epididymis:
6.2
testis:
24.4
PPY
ENSSSCG00000017368
ENSG00000108849
Pancreatic polypeptide
Group enriched
Detected in some
epididymis:
13.9
pineal gland:
21.9
SRD5A2
ENSSSCG00000008521
ENSG00000277893
3-oxo-5-alpha-steroid 4-dehydrogenase 2
Group enriched
Detected in some
epididymis:
30.8
lens:
74.3
FOXR2
ENSSSCG00000020805
ENSG00000189299
Forkhead box R2
Group enriched
Detected in some
epididymis:
7.3
testis:
4.1
na
ENSSSCG00000037320
Group enriched
Detected in some
epididymis:
4.6
testis:
17.6
na
ENSSSCG00000005473
Group enriched
Detected in some
brain:
8.8
epididymis:
24.1
salivary gland:
17.5
na
ENSSSCG00000014212
Group enriched
Detected in some
epididymis:
51.6
kidney:
26.3
na
ENSSSCG00000034687
ENSG00000184140
Group enriched
Detected in some
epididymis:
2.4
heart:
1.2
na
ENSSSCG00000038090
Group enriched
Detected in some
epididymis:
3.3
penis:
1.0
ADAM29
ENSSSCG00000009697
ENSG00000168594
ADAM metallopeptidase domain 29
Group enriched
Detected in some
epididymis:
25.8
male glands:
23.2
testis:
32.5
CD52
ENSSSCG00000040957
ENSG00000169442
CAMPATH-1 antigen precursor
Group enriched
Detected in some
ductus deferens:
181.8
epididymis:
47.2
na
ENSSSCG00000034508
Group enriched
Detected in some
epididymis:
10.0
testis:
30.9
na
ENSSSCG00000040790
Group enriched
Detected in some
aorta:
2.7
epididymis:
3.1
SLC17A2
ENSSSCG00000036191
ENSG00000112337
Solute carrier family 17 member 2
Group enriched
Detected in some
epididymis:
26.0
liver:
61.1
SLC24A2
ENSSSCG00000005167
ENSG00000155886
Sodium/potassium/calcium exchanger 2
Group enriched
Detected in some
brain:
49.8
epididymis:
19.6
lens:
12.6
pineal gland:
19.5
retina:
20.6
DEFB124
ENSSSCG00000030733
ENSG00000180383
Defensin beta 124
Group enriched
Detected in some
choroid plexus:
21.2
epididymis:
29.7
MCCD1
ENSSSCG00000023018
ENSG00000204511
Mitochondrial coiled-coil domain 1
Group enriched
Detected in some
epididymis:
91.0
kidney:
72.1
na
ENSSSCG00000022580
ENSG00000120440
Group enriched
Detected in some
ductus deferens:
12.7
epididymis:
26.9
na
ENSSSCG00000023690
Group enriched
Detected in some
epididymis:
5.0
testis:
16.0
na
ENSSSCG00000035843
Group enriched
Detected in some
epididymis:
7.6
testis:
23.1
na
ENSSSCG00000038482
Group enriched
Detected in some
epididymis:
4.4
testis:
12.9
NKAIN4
ENSSSCG00000036544
ENSG00000101198
Sodium/potassium transporting ATPase interacting 4
Group enriched
Detected in some
brain:
6.4
epididymis:
14.3
lens:
9.7
PTH2R
ENSSSCG00000016148
ENSG00000144407
Parathyroid hormone 2 receptor
Group enriched
Detected in some
brain:
7.2
ductus deferens:
4.6
epididymis:
9.6
RNF186
ENSSSCG00000035365
ENSG00000178828
Ring finger protein 186
Group enriched
Detected in some
epididymis:
14.7
large intestine:
7.3
small intestine:
16.8
urinary bladder:
8.3
ASB11
ENSSSCG00000012133
ENSG00000165192
Ankyrin repeat and SOCS box protein 11 isoform a
Group enriched
Detected in some
ductus deferens:
23.4
epididymis:
19.8
heart:
29.6
skeletal muscle:
51.5
MC4R
ENSSSCG00000004904
ENSG00000166603
Melanocortin receptor 4
Group enriched
Detected in some
brain:
17.5
epididymis:
7.4
heart:
8.0
na
ENSSSCG00000012175
ENSG00000165182
Group enriched
Detected in some
epididymis:
12.0
testis:
17.4
na
ENSSSCG00000039455
Group enriched
Detected in some
epididymis:
20.7
thyroid gland:
7.2
OR1F1
ENSSSCG00000007961
ENSG00000168124
Olfactory receptor family 1 subfamily F member 1
Group enriched
Detected in some
epididymis:
5.8
testis:
4.4
ACOXL
ENSSSCG00000037846
ENSG00000153093
Acyl-CoA oxidase like
Group enriched
Detected in some
ductus deferens:
15.1
epididymis:
36.6
kidney:
18.8
ASIC2
ENSSSCG00000040177
ENSG00000108684
Acid sensing ion channel subunit 2
Group enriched
Detected in some
brain:
18.5
ductus deferens:
10.5
epididymis:
14.5
retina:
13.3
CLPS
ENSSSCG00000001552
ENSG00000137392
Colipase
Group enriched
Detected in some
adipose tissue:
4.1
ductus deferens:
9.2
epididymis:
13.7
testis:
6.1
DEFB135
ENSSSCG00000039911
ENSG00000205883
Defensin beta 135
Group enriched
Detected in some
epididymis:
100.1
male glands:
40.0
GLRA3
ENSSSCG00000009698
ENSG00000145451
Glycine receptor alpha 3
Group enriched
Detected in some
epididymis:
55.6
male glands:
41.9
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