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Gene name
Human disease related genes
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UMAP gene cluster
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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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25 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000001551
ENSG00000196748
Group enriched
Detected in many
ductus deferens:
34.3
epididymis:
67.6
LTF
ENSSSCG00000029879
ENSG00000012223
Lactotransferrin precursor
Group enriched
Detected in many
epididymis:
127.0
upper respiratory system:
186.6
RTL5
ENSSSCG00000020876
ENSG00000242732
Retrotransposon Gag like 5
Group enriched
Detected in many
ductus deferens:
69.6
epididymis:
127.0
male glands:
72.3
HEXB
ENSSSCG00000014073
ENSG00000049860
Hexosaminidase subunit beta
Group enriched
Detected in many
epididymis:
222.2
male glands:
59.9
EDDM3B
ENSSSCG00000021866
ENSG00000181552,ENSG00000181562
Epididymal secretory protein E3-beta precursor
Group enriched
Detected in many
ductus deferens:
54.5
epididymis:
177.7
male glands:
55.5
testis:
77.3
na
ENSSSCG00000002657
ENSG00000260456
Group enriched
Detected in many
epididymis:
13.6
testis:
26.4
SYCP2
ENSSSCG00000007529
ENSG00000196074
Synaptonemal complex protein 2
Group enriched
Detected in many
epididymis:
13.9
testis:
55.2
ESPN
ENSSSCG00000003374
ENSG00000187017
Espin
Group enriched
Detected in many
epididymis:
92.1
retina:
24.2
testis:
77.5
GLDC
ENSSSCG00000005199
ENSG00000178445
Glycine decarboxylase
Group enriched
Detected in many
epididymis:
38.7
lens:
35.9
liver:
19.2
retina:
14.6
MST1
ENSSSCG00000011386
ENSG00000173531
Macrophage stimulating 1
Group enriched
Detected in many
epididymis:
18.3
liver:
52.4
thyroid gland:
23.7
na
ENSSSCG00000034699
Group enriched
Detected in many
epididymis:
47.7
kidney:
23.0
na
ENSSSCG00000040779
ENSG00000160200,ENSG00000274276
Group enriched
Detected in many
epididymis:
23.8
liver:
88.1
OTOS
ENSSSCG00000039496
ENSG00000178602
Otospiralin
Group enriched
Detected in many
brain:
26.2
epididymis:
7.8
male glands:
14.0
RGSL1
ENSSSCG00000015548
ENSG00000121446
Regulator of G protein signaling like 1
Group enriched
Detected in many
epididymis:
40.1
testis:
14.4
RPGRIP1
ENSSSCG00000002129
ENSG00000092200
RPGR interacting protein 1
Group enriched
Detected in many
epididymis:
15.0
retina:
21.4
testis:
51.9
TMPRSS9
ENSSSCG00000028363
ENSG00000178297
Transmembrane serine protease 9
Group enriched
Detected in many
epididymis:
28.4
lymphoid tissue:
12.2
ADAMTS16
ENSSSCG00000017109
ENSG00000145536
ADAM metallopeptidase with thrombospondin type 1 motif 16
Group enriched
Detected in many
adipose tissue:
7.9
ductus deferens:
7.0
epididymis:
8.9
kidney:
21.0
mesothelial tissue:
25.6
GLB1L2
ENSSSCG00000015258
ENSG00000149328
Galactosidase beta 1 like 2
Group enriched
Detected in many
epididymis:
120.8
thyroid gland:
84.9
HOXB6
ENSSSCG00000017539
ENSG00000108511
Homeobox B6
Group enriched
Detected in many
epididymis:
55.3
male glands:
186.0
na
ENSSSCG00000001931
ENSG00000175318
Group enriched
Detected in many
epididymis:
52.2
thyroid gland:
33.3
na
ENSSSCG00000010056
ENSG00000100031,ENSG00000133475
Glutathione hydrolase 1 proenzyme
Group enriched
Detected in many
ductus deferens:
25.6
epididymis:
73.0
kidney:
56.0
lymphoid tissue:
31.7
ovary:
85.8
NRCAM
ENSSSCG00000015445
ENSG00000091129
Neuronal cell adhesion molecule
Group enriched
Detected in many
brain:
39.3
epididymis:
51.9
lens:
124.8
RNASE10
ENSSSCG00000002134
ENSG00000182545
Inactive ribonuclease-like protein 10
Group enriched
Detected in many
brain:
7.1
choroid plexus:
5.0
epididymis:
20.0
fallopian tube:
12.0
TFAP2B
ENSSSCG00000025535
ENSG00000008196
Transcription factor AP-2-beta
Group enriched
Detected in many
breast:
49.4
epididymis:
82.5
USP51
ENSSSCG00000012349
ENSG00000247746
Ubiquitin specific peptidase 51
Group enriched
Detected in many
ductus deferens:
24.2
epididymis:
26.7
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