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Chromosome
1
2
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6
7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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152 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
WFDC10A
ENSSSCG00000029121
ENSG00000180305
WAP four-disulfide core domain 10A
Group enriched
Detected in some
ductus deferens:
130.1
epididymis:
430.8
na
ENSSSCG00000040753
Group enriched
Detected in some
ductus deferens:
93.6
epididymis:
115.5
na
ENSSSCG00000031069
ENSG00000214643
Group enriched
Detected in some
ductus deferens:
15.8
epididymis:
42.7
na
ENSSSCG00000036460
ENSG00000180872
Group enriched
Detected in some
ductus deferens:
69.5
epididymis:
143.5
na
ENSSSCG00000038515
Group enriched
Detected in some
ductus deferens:
210.7
epididymis:
182.1
SPINK14
ENSSSCG00000033173
ENSG00000196800
Serine peptidase inhibitor, Kazal type 14 (putative)
Tissue enriched
Detected in some
ductus deferens:
155.6
na
ENSSSCG00000033256
Group enriched
Detected in some
ductus deferens:
23.0
gallbladder:
16.0
skin:
10.3
UPK2
ENSSSCG00000015100
ENSG00000110375
Uroplakin-2 precursor
Group enriched
Detected in some
ductus deferens:
75.3
urinary bladder:
113.4
na
ENSSSCG00000005803
Group enriched
Detected in some
ductus deferens:
1.6
testis:
1.0
na
ENSSSCG00000001551
ENSG00000196748
Group enriched
Detected in many
ductus deferens:
34.3
epididymis:
67.6
na
ENSSSCG00000033572
ENSG00000101448
Group enriched
Detected in all
ductus deferens:
69.4
epididymis:
135.3
ABCB5
ENSSSCG00000015377
ENSG00000004846
ATP binding cassette subfamily B member 5
Group enriched
Detected in some
ductus deferens:
17.2
epididymis:
64.3
CD52
ENSSSCG00000040957
ENSG00000169442
CAMPATH-1 antigen precursor
Group enriched
Detected in some
ductus deferens:
181.8
epididymis:
47.2
na
ENSSSCG00000033906
Tissue enriched
Detected in some
ductus deferens:
90.7
na
ENSSSCG00000039858
ENSG00000243543
Group enriched
Detected in all
ductus deferens:
47.1
epididymis:
114.2
RTL5
ENSSSCG00000020876
ENSG00000242732
Retrotransposon Gag like 5
Group enriched
Detected in many
ductus deferens:
69.6
epididymis:
127.0
male glands:
72.3
na
ENSSSCG00000022580
ENSG00000120440
Group enriched
Detected in some
ductus deferens:
12.7
epididymis:
26.9
na
ENSSSCG00000039747
Group enriched
Detected in all
ductus deferens:
36.8
epididymis:
96.5
PTH2R
ENSSSCG00000016148
ENSG00000144407
Parathyroid hormone 2 receptor
Group enriched
Detected in some
brain:
7.2
ductus deferens:
4.6
epididymis:
9.6
SPINK6
ENSSSCG00000039674
ENSG00000178172
Serine peptidase inhibitor, Kazal type 6
Tissue enriched
Detected in many
ductus deferens:
23.1
ASB11
ENSSSCG00000012133
ENSG00000165192
Ankyrin repeat and SOCS box protein 11 isoform a
Group enriched
Detected in some
ductus deferens:
23.4
epididymis:
19.8
heart:
29.6
skeletal muscle:
51.5
EDDM3B
ENSSSCG00000021866
ENSG00000181552,ENSG00000181562
Epididymal secretory protein E3-beta precursor
Group enriched
Detected in many
ductus deferens:
54.5
epididymis:
177.7
male glands:
55.5
testis:
77.3
na
ENSSSCG00000022995
Group enriched
Detected in some
ductus deferens:
4.3
male glands:
8.8
ACOXL
ENSSSCG00000037846
ENSG00000153093
Acyl-CoA oxidase like
Group enriched
Detected in some
ductus deferens:
15.1
epididymis:
36.6
kidney:
18.8
ASIC2
ENSSSCG00000040177
ENSG00000108684
Acid sensing ion channel subunit 2
Group enriched
Detected in some
brain:
18.5
ductus deferens:
10.5
epididymis:
14.5
retina:
13.3
ATP2B3
ENSSSCG00000012769
ENSG00000067842
ATPase plasma membrane Ca2+ transporting 3
Group enriched
Detected in some
adrenal gland:
25.3
brain:
25.9
choroid plexus:
33.3
ductus deferens:
15.0
pituitary gland:
13.8
CLPS
ENSSSCG00000001552
ENSG00000137392
Colipase
Group enriched
Detected in some
adipose tissue:
4.1
ductus deferens:
9.2
epididymis:
13.7
testis:
6.1
na
ENSSSCG00000007224
Preprobeta-defensin 108-like
Group enriched
Detected in some
ductus deferens:
27.2
epididymis:
7.7
OTOGL
ENSSSCG00000000943
ENSG00000165899
Otogelin like
Tissue enriched
Detected in some
ductus deferens:
41.3
SORCS1
ENSSSCG00000030026
ENSG00000108018
Sortilin related VPS10 domain containing receptor 1
Group enriched
Detected in many
ductus deferens:
55.7
vagus nerve:
78.5
DGKK
ENSSSCG00000012308
ENSG00000274588
Diacylglycerol kinase kappa
Tissue enriched
Detected in some
ductus deferens:
25.4
na
ENSSSCG00000038652
Group enriched
Detected in some
ductus deferens:
18.0
male glands:
62.8
testis:
22.9
na
ENSSSCG00000040762
Group enriched
Detected in some
ductus deferens:
4.8
epididymis:
8.6
lens:
10.4
liver:
12.4
retina:
14.5
RASGEF1C
ENSSSCG00000014011
ENSG00000146090
RasGEF domain family member 1C
Group enriched
Detected in many
brain:
28.4
ductus deferens:
8.1
vagus nerve:
28.2
SCN7A
ENSSSCG00000015914
ENSG00000136546
Sodium voltage-gated channel alpha subunit 7
Group enriched
Detected in many
ductus deferens:
24.9
vagus nerve:
56.7
ADAMTS16
ENSSSCG00000017109
ENSG00000145536
ADAM metallopeptidase with thrombospondin type 1 motif 16
Group enriched
Detected in many
adipose tissue:
7.9
ductus deferens:
7.0
epididymis:
8.9
kidney:
21.0
mesothelial tissue:
25.6
ATP13A4
ENSSSCG00000011821
ENSG00000127249
ATPase 13A4
Group enriched
Detected in some
ductus deferens:
24.5
epididymis:
62.6
male glands:
70.4
CRISP1
ENSSSCG00000001739
ENSG00000124812
Cysteine-rich secretory protein 1 precursor
Group enriched
Detected in all
ductus deferens:
38.4
epididymis:
73.0
na
ENSSSCG00000006881
Group enriched
Detected in some
brain:
10.5
ductus deferens:
5.1
testis:
3.0
na
ENSSSCG00000010056
ENSG00000100031,ENSG00000133475
Glutathione hydrolase 1 proenzyme
Group enriched
Detected in many
ductus deferens:
25.6
epididymis:
73.0
kidney:
56.0
lymphoid tissue:
31.7
ovary:
85.8
na
ENSSSCG00000012049
ENSG00000180509,ENSG00000276289
Group enriched
Detected in many
ductus deferens:
18.2
heart:
53.0
ovary:
16.4
small intestine:
35.1
na
ENSSSCG00000031811
Group enriched
Detected in some
brain:
2.7
ductus deferens:
1.3
epididymis:
2.4
retina:
1.0
RPRM
ENSSSCG00000037225
ENSG00000177519
Reprimo, TP53 dependent G2 arrest mediator homolog
Group enriched
Detected in many
brain:
38.8
ductus deferens:
116.1
USP51
ENSSSCG00000012349
ENSG00000247746
Ubiquitin specific peptidase 51
Group enriched
Detected in many
ductus deferens:
24.2
epididymis:
26.7
ACTA2
ENSSSCG00000010447
ENSG00000107796
Actin, aortic smooth muscle
Tissue enhanced
Detected in many
ductus deferens:
294.9
endometrium:
265.1
penis:
206.0
ADRA1D
ENSSSCG00000007139
ENSG00000171873
Alpha-1D adrenergic receptor
Tissue enhanced
Detected in many
brain:
11.8
ductus deferens:
12.7
male glands:
12.9
ARTN
ENSSSCG00000034778
ENSG00000117407
Artemin
Tissue enhanced
Detected in many
ductus deferens:
7.4
male glands:
11.4
penis:
6.9
ATF3
ENSSSCG00000015595
ENSG00000162772
Activating transcription factor 3
Tissue enhanced
Detected in many
aorta:
93.6
ductus deferens:
75.9
AVPR2
ENSSSCG00000012789
ENSG00000126895
Vasopressin V2 receptor
Tissue enhanced
Detected in many
ductus deferens:
10.9
kidney:
16.5
male glands:
19.8
BEX4
ENSSSCG00000022635
ENSG00000102409
Brain expressed X-linked 4
Tissue enhanced
Detected in all
ductus deferens:
44.6
pineal gland:
60.6
pituitary gland:
54.8
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