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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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63 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACTA2
ENSSSCG00000010447
ENSG00000107796
Actin, aortic smooth muscle
Tissue enhanced
Detected in many
ductus deferens:
294.9
endometrium:
265.1
penis:
206.0
ADRA1D
ENSSSCG00000007139
ENSG00000171873
Alpha-1D adrenergic receptor
Tissue enhanced
Detected in many
brain:
11.8
ductus deferens:
12.7
male glands:
12.9
ARTN
ENSSSCG00000034778
ENSG00000117407
Artemin
Tissue enhanced
Detected in many
ductus deferens:
7.4
male glands:
11.4
penis:
6.9
ATF3
ENSSSCG00000015595
ENSG00000162772
Activating transcription factor 3
Tissue enhanced
Detected in many
aorta:
93.6
ductus deferens:
75.9
AVPR2
ENSSSCG00000012789
ENSG00000126895
Vasopressin V2 receptor
Tissue enhanced
Detected in many
ductus deferens:
10.9
kidney:
16.5
male glands:
19.8
CDH19
ENSSSCG00000004885
ENSG00000071991
Cadherin 19
Tissue enhanced
Detected in many
ductus deferens:
10.5
vagus nerve:
35.0
COL23A1
ENSSSCG00000014029
ENSG00000050767
Collagen type XXIII alpha 1 chain
Tissue enhanced
Detected in many
ductus deferens:
29.1
epididymis:
45.5
thyroid gland:
24.9
CPAMD8
ENSSSCG00000013869
ENSG00000160111
C3 and PZP like, alpha-2-macroglobulin domain containing 8
Tissue enhanced
Detected in many
cartilage:
25.2
cervix:
18.1
ductus deferens:
19.3
lymphoid tissue:
19.7
synovial tissue:
19.4
FBN2
ENSSSCG00000014256
ENSG00000138829
Fibrillin 2
Tissue enhanced
Detected in many
cartilage:
18.2
ductus deferens:
24.9
pituitary gland:
20.0
FBXO2
ENSSSCG00000025667
ENSG00000116661
F-box protein 2
Tissue enhanced
Detected in many
brain:
24.6
ductus deferens:
16.4
pineal gland:
11.3
FRMD5
ENSSSCG00000004694
ENSG00000171877
FERM domain containing 5
Tissue enhanced
Detected in many
brain:
33.6
ductus deferens:
26.5
epididymis:
22.0
male glands:
32.1
GLIS1
ENSSSCG00000003846
ENSG00000174332
GLIS family zinc finger 1
Tissue enhanced
Detected in many
cartilage:
36.5
ductus deferens:
36.4
kidney:
25.7
GREB1L
ENSSSCG00000003699
ENSG00000141449
Growth regulation by estrogen in breast cancer 1 like
Tissue enhanced
Detected in many
ductus deferens:
37.3
epididymis:
62.0
GRIK3
ENSSSCG00000003640
ENSG00000163873
Glutamate ionotropic receptor kainate type subunit 3
Tissue enhanced
Detected in many
brain:
25.7
ductus deferens:
13.2
vagus nerve:
30.2
HOXA10
ENSSSCG00000021204
ENSG00000253293
Homeobox protein Hox-A10
Tissue enhanced
Detected in many
cartilage:
42.7
ductus deferens:
37.9
kidney:
38.5
male glands:
45.3
urinary bladder:
40.7
HOXD10
ENSSSCG00000015981
ENSG00000128710
Homeobox D10
Tissue enhanced
Detected in many
ductus deferens:
17.4
male glands:
59.0
smooth muscle:
17.7
HS3ST5
ENSSSCG00000004433
ENSG00000249853
Heparan sulfate-glucosamine 3-sulfotransferase 5
Tissue enhanced
Detected in many
adrenal gland:
11.0
brain:
21.2
ductus deferens:
14.5
kidney:
13.4
ID4
ENSSSCG00000024312
ENSG00000172201
DNA-binding protein inhibitor ID-4
Tissue enhanced
Detected in many
ductus deferens:
49.5
KCNE2
ENSSSCG00000012045
ENSG00000159197
Potassium voltage-gated channel subfamily E regulatory subunit 2
Tissue enhanced
Detected in many
choroid plexus:
9.4
ductus deferens:
12.5
endometrium:
10.8
stomach:
7.0
KCNMB1
ENSSSCG00000017005
ENSG00000145936
Potassium calcium-activated channel subfamily M regulatory beta subunit 1
Tissue enhanced
Detected in many
ductus deferens:
58.9
smooth muscle:
109.2
L1CAM
ENSSSCG00000012787
ENSG00000198910
L1 cell adhesion molecule
Tissue enhanced
Detected in many
ductus deferens:
55.0
kidney:
58.6
vagus nerve:
52.3
MEI1
ENSSSCG00000034405
ENSG00000167077
Meiotic double-stranded break formation protein 1
Tissue enhanced
Detected in many
ductus deferens:
23.6
testis:
10.0
MYH11
ENSSSCG00000000146
ENSG00000133392
Myosin heavy chain 11
Tissue enhanced
Detected in many
ductus deferens:
178.9
smooth muscle:
565.6
urinary bladder:
187.5
MYLK
ENSSSCG00000011867
ENSG00000065534
Myosin light chain kinase
Tissue enhanced
Detected in many
ductus deferens:
164.5
endometrium:
133.8
smooth muscle:
313.8
na
ENSSSCG00000001500
ENSG00000124749
Tissue enhanced
Detected in many
ductus deferens:
35.8
penis:
26.8
na
ENSSSCG00000003781
ENSG00000178965
Tissue enhanced
Detected in many
ductus deferens:
16.3
fallopian tube:
21.3
pituitary gland:
16.8
upper respiratory system:
44.0
na
ENSSSCG00000006525
ENSG00000185499
Tissue enhanced
Detected in many
ductus deferens:
54.4
gallbladder:
54.0
kidney:
50.9
stomach:
70.9
na
ENSSSCG00000011688
Tissue enhanced
Detected in many
cervix:
19.5
ductus deferens:
13.6
na
ENSSSCG00000012350
Tissue enhanced
Detected in many
ductus deferens:
20.8
epididymis:
42.4
na
ENSSSCG00000012530
Transcription elongation factor A protein-like 2
Tissue enhanced
Detected in many
ductus deferens:
31.3
epididymis:
16.2
pituitary gland:
21.3
na
ENSSSCG00000026271
Tissue enhanced
Detected in many
ductus deferens:
14.8
epididymis:
9.1
male glands:
18.1
na
ENSSSCG00000031003
Tissue enhanced
Detected in many
ductus deferens:
8.3
urinary bladder:
13.1
na
ENSSSCG00000031418
Tissue enhanced
Detected in many
ductus deferens:
19.1
upper respiratory system:
19.5
na
ENSSSCG00000031692
Tissue enhanced
Detected in many
ductus deferens:
51.4
heart:
66.5
skeletal muscle:
61.7
smooth muscle:
62.8
na
ENSSSCG00000032383
Uncharacterized protein LOC100514340
Tissue enhanced
Detected in many
ductus deferens:
92.6
smooth muscle:
130.8
na
ENSSSCG00000032744
Tissue enhanced
Detected in many
brain:
12.1
ductus deferens:
10.9
ovary:
10.6
na
ENSSSCG00000033339
Tissue enhanced
Detected in many
ductus deferens:
33.0
na
ENSSSCG00000033958
ENSG00000198838
Tissue enhanced
Detected in many
brain:
20.7
cervix:
16.3
ductus deferens:
22.3
smooth muscle:
15.7
na
ENSSSCG00000034266
ENSG00000196557
Tissue enhanced
Detected in many
ductus deferens:
33.3
smooth muscle:
41.2
na
ENSSSCG00000035308
Tissue enhanced
Detected in many
ductus deferens:
567.2
smooth muscle:
636.1
na
ENSSSCG00000035404
Tissue enhanced
Detected in many
ductus deferens:
22.5
epididymis:
42.8
na
ENSSSCG00000035687
Tissue enhanced
Detected in many
ductus deferens:
13.0
dura mater:
23.8
na
ENSSSCG00000035908
Tissue enhanced
Detected in many
ductus deferens:
35.8
testis:
24.6
na
ENSSSCG00000036173
Tissue enhanced
Detected in many
ductus deferens:
22.6
na
ENSSSCG00000036598
Tissue enhanced
Detected in many
ductus deferens:
21.5
male glands:
16.6
na
ENSSSCG00000036859
Tissue enhanced
Detected in many
ductus deferens:
14.7
endometrium:
16.0
stomach:
21.8
na
ENSSSCG00000038903
ENSG00000128655,ENSG00000284741
Tissue enhanced
Detected in many
ductus deferens:
7.0
gallbladder:
7.5
large intestine:
6.4
testis:
10.6
na
ENSSSCG00000040108
Tissue enhanced
Detected in many
brain:
16.8
ductus deferens:
17.6
kidney:
18.3
skeletal muscle:
19.1
na
ENSSSCG00000040515
Tissue enhanced
Detected in many
brain:
17.8
ductus deferens:
29.2
male glands:
47.1
vagus nerve:
19.8
OSR2
ENSSSCG00000006073
ENSG00000164920
Odd-skipped related transciption factor 2
Tissue enhanced
Detected in many
cervix:
47.6
ductus deferens:
50.6
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