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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
DICTIONARY
THE PROJECT
INTRODUCTION
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TECHNICAL DATA
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RELEASE HISTORY
1175 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
UBQLN3
ENSSSCG00000014691
ENSG00000175520
Ubiquilin 3
Tissue enriched
Detected in single
testis:
106.1
USP26
ENSSSCG00000012678
ENSG00000134588
Ubiquitin specific peptidase 26
Tissue enriched
Detected in single
testis:
20.4
USP44
ENSSSCG00000021307
ENSG00000136014
Ubiquitin specific peptidase 44
Tissue enriched
Detected in some
testis:
38.4
USP50
ENSSSCG00000004638
ENSG00000170236
Ubiquitin specific peptidase 50
Tissue enriched
Detected in single
testis:
102.2
VARS
ENSSSCG00000038950
ENSG00000204394
Valine--tRNA ligase
Tissue enriched
Detected in all
testis:
76.7
VPS26B
ENSSSCG00000028123
Vacuolar protein sorting-associated protein 26B
Tissue enriched
Detected in all
epididymis:
263.1
WDR53
ENSSSCG00000036536
ENSG00000185798
WD repeat domain 53
Tissue enriched
Detected in all
testis:
58.9
WDR62
ENSSSCG00000002923
ENSG00000075702
WD repeat-containing protein 62
Tissue enriched
Detected in all
testis:
55.3
WDR88
ENSSSCG00000002862
ENSG00000166359
WD repeat domain 88
Tissue enriched
Detected in single
testis:
29.6
WFDC8
ENSSSCG00000007407
ENSG00000158901
WAP four-disulfide core domain 8
Tissue enriched
Detected in some
epididymis:
61.9
WFDC9
ENSSSCG00000007408
ENSG00000180205
WAP four-disulfide core domain 9
Tissue enriched
Detected in some
epididymis:
132.7
YBX2
ENSSSCG00000017938
ENSG00000006047
Y-box binding protein 2
Tissue enriched
Detected in some
testis:
270.8
ZAR1
ENSSSCG00000008824
ENSG00000182223
Zygote arrest protein 1
Tissue enriched
Detected in some
testis:
22.0
ZBTB32
ENSSSCG00000002908
ENSG00000011590
Zinc finger and BTB domain containing 32
Tissue enriched
Detected in some
testis:
49.4
ZC2HC1B
ENSSSCG00000004128
ENSG00000118491
Zinc finger C2HC-type containing 1B
Tissue enriched
Detected in some
testis:
83.2
ZC2HC1C
ENSSSCG00000002380
ENSG00000119703
Zinc finger C2HC-type containing 1C
Tissue enriched
Detected in some
testis:
50.4
ZCCHC13
ENSSSCG00000035737
ENSG00000187969
Zinc finger CCHC-type containing 13
Tissue enriched
Detected in single
testis:
47.3
ZFP42
ENSSSCG00000035444
ENSG00000179059
ZFP42 zinc finger protein
Tissue enriched
Detected in some
testis:
13.3
ZNF541
ENSSSCG00000003119
ENSG00000118156
Zinc finger protein 541
Tissue enriched
Detected in some
testis:
46.4
ZNF646
ENSSSCG00000026817
ENSG00000167395
Zinc finger protein 646
Tissue enriched
Detected in all
testis:
84.5
ZNF683
ENSSSCG00000040579
ENSG00000176083
Zinc finger protein 683
Tissue enriched
Detected in many
testis:
82.9
ZNRF4
ENSSSCG00000013519
ENSG00000105428
Zinc and ring finger 4
Tissue enriched
Detected in single
testis:
117.4
ZPBP
ENSSSCG00000015627
ENSG00000042813
Zona pellucida-binding protein 1 precursor
Tissue enriched
Detected in some
testis:
75.7
ZPBP2
ENSSSCG00000017493
ENSG00000186075
Zona pellucida-binding protein 2 precursor
Tissue enriched
Detected in all
testis:
56.0
ZYG11A
ENSSSCG00000031324
ENSG00000203995
Zyg-11 family member A, cell cycle regulator
Tissue enriched
Detected in some
testis:
16.3
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