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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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321 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACAT2
ENSSSCG00000004049
ENSG00000120437
Acetyl-CoA acetyltransferase 2
Tissue enhanced
Detected in all
brain:
44.7
cornea:
51.1
ADAMTS14
ENSSSCG00000010272
ENSG00000138316
ADAM metallopeptidase with thrombospondin type 1 motif 14
Tissue enhanced
Detected in many
cornea:
22.4
ANGPTL7
ENSSSCG00000003414
ENSG00000171819
Angiopoietin-related protein 7 precursor
Tissue enhanced
Detected in many
cornea:
147.3
vagus nerve:
43.5
APOBEC1
ENSSSCG00000000668
ENSG00000111701
Apolipoprotein B mRNA editing enzyme catalytic subunit 1
Tissue enhanced
Detected in some
cornea:
11.9
large intestine:
22.0
small intestine:
8.7
upper respiratory system:
19.9
AQP5
ENSSSCG00000000211
ENSG00000161798
Aquaporin-5
Tissue enhanced
Detected in many
cornea:
35.3
male glands:
97.9
salivary gland:
42.2
upper respiratory system:
40.6
ARNT2
ENSSSCG00000040288
ENSG00000172379
Aryl hydrocarbon receptor nuclear translocator 2
Tissue enhanced
Detected in many
brain:
40.4
cornea:
43.5
epididymis:
27.7
ASB9
ENSSSCG00000012132
ENSG00000102048
Ankyrin repeat and SOCS box protein 9
Tissue enhanced
Detected in many
cornea:
21.6
mouth:
21.9
ASCL2
ENSSSCG00000033507
ENSG00000183734
Achaete-scute homolog 2
Tissue enhanced
Detected in some
cornea:
18.8
large intestine:
9.5
small intestine:
10.7
urinary bladder:
9.3
B3GNT7
ENSSSCG00000033015
ENSG00000156966
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
Tissue enhanced
Detected in all
cornea:
31.8
large intestine:
40.0
lens:
33.5
BATF3
ENSSSCG00000026587
ENSG00000123685
Basic leucine zipper ATF-like transcription factor 3
Tissue enhanced
Detected in many
cornea:
11.7
BNC1
ENSSSCG00000001798
ENSG00000169594
Basonuclin 1
Tissue enhanced
Detected in some
adipose tissue:
18.1
cornea:
34.6
mesothelial tissue:
41.0
skin:
23.0
C1QTNF7
ENSSSCG00000008737
ENSG00000163145
Complement C1q tumor necrosis factor-related protein 7 precursor
Tissue enhanced
Detected in many
cornea:
30.9
C6orf132
ENSSSCG00000036801
ENSG00000188112
Chromosome 6 open reading frame 132
Tissue enhanced
Detected in many
cornea:
85.0
mouth:
39.1
stomach:
38.1
CADPS
ENSSSCG00000011489
ENSG00000163618
Calcium dependent secretion activator
Tissue enhanced
Detected in some
brain:
34.3
cornea:
14.2
pituitary gland:
14.2
retina:
54.8
CAPG
ENSSSCG00000008239
ENSG00000042493
Capping actin protein, gelsolin like
Tissue enhanced
Detected in all
cornea:
75.4
lens:
57.7
CAPN14
ENSSSCG00000024781
ENSG00000214711
Calpain 14
Tissue enhanced
Detected in some
cornea:
6.3
ductus deferens:
3.2
upper respiratory system:
11.3
CD109
ENSSSCG00000004485
ENSG00000156535
CD109 molecule
Tissue enhanced
Detected in all
cartilage:
56.8
cornea:
44.6
CHAT
ENSSSCG00000010392
ENSG00000070748
Choline O-acetyltransferase
Tissue enhanced
Detected in all
brain:
14.4
cornea:
23.6
CHST1
ENSSSCG00000013273
ENSG00000175264
Carbohydrate sulfotransferase 1
Tissue enhanced
Detected in many
brain:
37.4
cornea:
15.8
CIDEA
ENSSSCG00000024644
ENSG00000176194
Cell death activator CIDE-A
Tissue enhanced
Detected in many
adipose tissue:
75.3
aorta:
37.8
bone marrow:
43.0
cornea:
28.4
CLCA2
ENSSSCG00000006935
ENSG00000137975
Chloride channel accessory 2
Tissue enhanced
Detected in all
cornea:
39.9
male glands:
40.5
skin:
26.2
CLIC3
ENSSSCG00000037395
ENSG00000169583
Chloride intracellular channel 3
Tissue enhanced
Detected in many
cornea:
37.8
thyroid gland:
75.4
CNKSR1
ENSSSCG00000028387
ENSG00000142675
Connector enhancer of kinase suppressor of Ras 1
Tissue enhanced
Detected in many
cornea:
22.0
skeletal muscle:
34.5
COL17A1
ENSSSCG00000010607
ENSG00000065618
Collagen type XVII alpha 1 chain
Tissue enhanced
Detected in many
cornea:
150.8
skin:
41.1
COL6A3
ENSSSCG00000027331
ENSG00000163359
Collagen type VI alpha 3 chain
Tissue enhanced
Detected in many
cornea:
101.7
COL8A1
ENSSSCG00000011973
ENSG00000144810
Collagen type VIII alpha 1 chain
Tissue enhanced
Detected in many
cartilage:
78.5
cornea:
48.6
dura mater:
40.6
COL8A2
ENSSSCG00000033641
ENSG00000171812
Collagen type VIII alpha 2 chain
Tissue enhanced
Detected in many
cornea:
73.0
dura mater:
18.9
COLGALT2
ENSSSCG00000030217
ENSG00000198756
Collagen beta(1-O)galactosyltransferase 2
Tissue enhanced
Detected in many
cartilage:
67.3
cornea:
37.8
CPXM2
ENSSSCG00000010728
ENSG00000121898
Carboxypeptidase X, M14 family member 2
Tissue enhanced
Detected in all
cornea:
87.2
CRB2
ENSSSCG00000005584
ENSG00000148204
Crumbs 2, cell polarity complex component
Tissue enhanced
Detected in some
adipose tissue:
22.8
cornea:
11.4
mesothelial tissue:
22.3
CRLF1
ENSSSCG00000013909
ENSG00000006016
Cytokine receptor like factor 1
Tissue enhanced
Detected in many
cornea:
37.9
penis:
22.3
CRYBG1
ENSSSCG00000004371
ENSG00000112297
Crystallin beta-gamma domain containing 1
Tissue enhanced
Detected in many
cornea:
55.1
mouth:
35.3
CTSV
ENSSSCG00000011171
ENSG00000136943
Cathepsin L1 Cathepsin L1 heavy chain Cathepsin L1 light chain
Tissue enhanced
Detected in all
cornea:
126.5
liver:
80.8
CYP26A1
ENSSSCG00000010475
ENSG00000095596
Cytochrome P450, family 26, subfamily A, polypeptide 1
Tissue enhanced
Detected in some
brain:
10.6
cornea:
10.6
endometrium:
15.5
retina:
6.7
DCDC1
ENSSSCG00000013326
ENSG00000170959
Doublecortin domain containing 1
Tissue enhanced
Detected in many
cornea:
50.0
fallopian tube:
24.3
DENND2C
ENSSSCG00000006755
ENSG00000175984
DENN domain containing 2C
Tissue enhanced
Detected in many
cornea:
21.5
mouth:
19.6
skin:
41.0
DKK2
ENSSSCG00000032094
ENSG00000155011
Dickkopf WNT signaling pathway inhibitor 2
Tissue enhanced
Detected in many
cornea:
29.4
ovary:
44.1
DMRTA2
ENSSSCG00000030552
ENSG00000142700
DMRT like family A2
Tissue enhanced
Detected in some
choroid plexus:
15.3
cornea:
52.8
lens:
12.0
pituitary gland:
15.2
upper respiratory system:
13.8
DSC3
ENSSSCG00000024800
ENSG00000134762
Desmocollin 3
Tissue enhanced
Detected in many
cornea:
77.5
mouth:
100.5
skin:
50.9
DSP
ENSSSCG00000001025
ENSG00000096696
Desmoplakin
Tissue enhanced
Detected in all
cornea:
119.8
mouth:
102.2
skin:
94.4
EDNRB
ENSSSCG00000009477
ENSG00000136160
Endothelin receptor type B
Tissue enhanced
Detected in many
adrenal gland:
64.1
choroid plexus:
64.7
cornea:
49.8
ovary:
62.6
EFEMP1
ENSSSCG00000008397
ENSG00000115380
EGF-containing fibulin-like extracellular matrix protein 1 precursor
Tissue enhanced
Detected in all
cornea:
98.9
EFTUD2
ENSSSCG00000017346
ENSG00000108883
Elongation factor Tu GTP binding domain containing 2
Tissue enhanced
Detected in all
cornea:
73.5
lens:
69.9
EGFL6
ENSSSCG00000012121
ENSG00000198759
EGF like domain multiple 6
Tissue enhanced
Detected in many
cornea:
16.4
dura mater:
21.7
pituitary gland:
25.4
upper respiratory system:
14.7
EMP1
ENSSSCG00000036723
ENSG00000134531
Epithelial membrane protein 1
Tissue enhanced
Detected in many
cornea:
92.1
mouth:
75.9
ENOX1
ENSSSCG00000021818
ENSG00000120658
Ecto-NOX disulfide-thiol exchanger 1
Tissue enhanced
Detected in many
cornea:
37.1
EVPL
ENSSSCG00000017192
ENSG00000167880
Envoplakin
Tissue enhanced
Detected in many
cornea:
52.6
mouth:
25.1
stomach:
28.1
F3
ENSSSCG00000022447
ENSG00000117525
Tissue factor
Tissue enhanced
Detected in all
cornea:
64.5
ovary:
111.0
upper respiratory system:
53.4
FAM110A
ENSSSCG00000007200
ENSG00000125898
Family with sequence similarity 110 member A
Tissue enhanced
Detected in many
cornea:
26.5
FAM169A
ENSSSCG00000014076
ENSG00000198780
Family with sequence similarity 169 member A
Tissue enhanced
Detected in many
cornea:
32.5
lens:
32.1
pineal gland:
28.7
pituitary gland:
27.6
retina:
49.7
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