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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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40 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000034971
Group enriched
Detected in some
brain:
2.3
cornea:
2.2
thyroid gland:
1.9
na
ENSSSCG00000039957
Group enriched
Detected in some
brain:
2.1
cornea:
1.7
MGARP
ENSSSCG00000009062
ENSG00000137463
Protein MGARP
Group enriched
Detected in some
cornea:
99.5
lens:
163.1
na
ENSSSCG00000034588
Group enriched
Detected in some
brain:
1.9
cornea:
1.0
PDYN
ENSSSCG00000037684
ENSG00000101327
Proenkephalin-B preproprotein
Group enriched
Detected in some
brain:
49.1
cornea:
60.7
na
ENSSSCG00000031411
Group enriched
Detected in some
cornea:
4.3
male glands:
1.3
GPHB5
ENSSSCG00000005116
ENSG00000179600
Glycoprotein hormone beta 5
Group enriched
Detected in some
cornea:
11.3
testis:
16.5
HCRTR2
ENSSSCG00000001481
ENSG00000137252
Orexin receptor type 2
Group enriched
Detected in some
brain:
8.5
cornea:
5.0
PADI3
ENSSSCG00000003482
ENSG00000142619
Peptidyl arginine deiminase 3
Group enriched
Detected in some
cornea:
18.0
skin:
30.9
ERICH5
ENSSSCG00000006080
ENSG00000177459
Glutamate rich 5
Group enriched
Detected in some
cornea:
89.6
lens:
86.8
na
ENSSSCG00000034279
ENSG00000204544
Group enriched
Detected in some
cornea:
119.5
mouth:
81.3
na
ENSSSCG00000036259
Group enriched
Detected in some
cornea:
9.8
small intestine:
34.3
stomach:
17.9
LY6G6C
ENSSSCG00000036566
ENSG00000204421
Lymphocyte antigen 6 family member G6C
Group enriched
Detected in some
cornea:
9.4
mouth:
31.3
skin:
15.0
testis:
33.3
na
ENSSSCG00000002883
ENSG00000161249
Group enriched
Detected in some
cornea:
97.5
skin:
48.2
GRP
ENSSSCG00000037300
ENSG00000134443
Gastrin releasing peptide
Group enriched
Detected in some
brain:
22.7
cornea:
33.4
LYPD3
ENSSSCG00000003062
ENSG00000124466
LY6/PLAUR domain containing 3
Group enriched
Detected in some
cornea:
51.4
mouth:
55.6
skin:
24.5
na
ENSSSCG00000017433
Group enriched
Detected in some
cornea:
5.7
mouth:
8.0
skin:
16.7
COL4A4
ENSSSCG00000016244
ENSG00000081052
Collagen type IV alpha 4 chain
Group enriched
Detected in some
cornea:
48.5
lens:
82.9
DAPL1
ENSSSCG00000015879
ENSG00000163331
Death-associated protein-like 1
Group enriched
Detected in some
cornea:
129.1
lens:
209.3
IL1RL2
ENSSSCG00000023550
ENSG00000115598
Interleukin 1 receptor like 2
Group enriched
Detected in some
cornea:
34.7
mouth:
26.2
skin:
62.1
na
ENSSSCG00000031181
Group enriched
Detected in some
cornea:
20.5
kidney:
7.0
lens:
25.1
na
ENSSSCG00000034849
Group enriched
Detected in some
cornea:
5.1
testis:
10.1
na
ENSSSCG00000035086
Group enriched
Detected in some
brain:
101.7
cornea:
57.5
epididymis:
47.9
kidney:
68.2
male glands:
118.2
na
ENSSSCG00000037650
Group enriched
Detected in some
adipose tissue:
4.7
cornea:
4.6
na
ENSSSCG00000040653
Group enriched
Detected in some
brain:
43.2
cornea:
35.0
NPBWR2
ENSSSCG00000037868
ENSG00000125522
Neuropeptides B and W receptor 2
Group enriched
Detected in some
brain:
3.8
cornea:
7.2
mouth:
1.8
urinary bladder:
1.8
PKP1
ENSSSCG00000030694
ENSG00000081277
Plakophilin 1
Group enriched
Detected in some
cornea:
63.6
mouth:
72.7
skin:
70.8
S100A8
ENSSSCG00000006590
ENSG00000143546
Protein S100-A8
Group enriched
Detected in some
cornea:
459.9
mouth:
180.6
WNT3
ENSSSCG00000017317
ENSG00000108379
Wnt family member 3
Group enriched
Detected in some
cornea:
38.0
skin:
26.4
testis:
17.9
DSG1
ENSSSCG00000020694
ENSG00000134760
Desmoglein-1 precursor
Group enriched
Detected in some
cornea:
61.4
mouth:
63.3
skin:
32.2
GJB5
ENSSSCG00000003585
ENSG00000189280
Gap junction protein beta 5
Group enriched
Detected in some
cornea:
33.3
mouth:
14.1
skin:
11.4
upper respiratory system:
10.2
MMP17
ENSSSCG00000024236
ENSG00000198598
Matrix metallopeptidase 17
Group enriched
Detected in some
brain:
18.9
cornea:
6.5
lymphoid tissue:
12.5
pineal gland:
6.2
na
ENSSSCG00000000353
Group enriched
Detected in some
cornea:
1.0
heart:
4.0
liver:
3.6
na
ENSSSCG00000016245
ENSG00000169031
Group enriched
Detected in some
cornea:
40.8
lens:
74.9
na
ENSSSCG00000034908
Group enriched
Detected in some
choroid plexus:
4.4
cornea:
1.8
heart:
1.9
kidney:
2.4
na
ENSSSCG00000036211
ENSG00000221882
Group enriched
Detected in some
cornea:
7.7
male glands:
7.2
small intestine:
13.6
na
ENSSSCG00000040764
Group enriched
Detected in some
cornea:
5.2
male glands:
5.9
small intestine:
16.9
PLEKHN1
ENSSSCG00000030505
ENSG00000187583
Pleckstrin homology domain containing N1
Group enriched
Detected in some
cornea:
18.6
mouth:
19.4
skin:
56.3
small intestine:
14.6
PSAPL1
ENSSSCG00000008714
ENSG00000178597
Prosaposin like 1 (gene/pseudogene)
Group enriched
Detected in some
breast:
6.7
cornea:
10.1
male glands:
13.7
skin:
5.4
urinary bladder:
17.8
THEM5
ENSSSCG00000006614
ENSG00000196407
Thioesterase superfamily member 5
Group enriched
Detected in some
cornea:
49.6
epididymis:
13.1
male glands:
27.5
mouth:
27.3
skin:
51.8
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