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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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RELEASE HISTORY
249 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000038668
Tissue enriched
Detected in some
retina:
45.3
na
ENSSSCG00000038814
Tissue enriched
Detected in single
lens:
330.0
na
ENSSSCG00000038816
ENSG00000160202,ENSG00000276076
Alpha-crystallin A chain
Tissue enriched
Detected in some
lens:
7670.7
na
ENSSSCG00000039222
ENSG00000176788
Tissue enriched
Detected in many
lens:
666.9
na
ENSSSCG00000039248
Tissue enriched
Detected in some
lens:
35.5
na
ENSSSCG00000039280
Tissue enriched
Detected in some
lens:
14.3
na
ENSSSCG00000039376
Tissue enriched
Detected in single
cornea:
2.5
na
ENSSSCG00000039771
Tissue enriched
Detected in single
lens:
29.8
na
ENSSSCG00000039806
Tissue enriched
Detected in some
cornea:
32.1
na
ENSSSCG00000039891
Tissue enriched
Detected in single
lens:
2.4
na
ENSSSCG00000040049
Tissue enriched
Detected in single
cornea:
5.2
na
ENSSSCG00000040104
Tissue enriched
Detected in single
cornea:
4.8
na
ENSSSCG00000040110
ENSG00000167083
Tissue enriched
Detected in some
retina:
56.9
na
ENSSSCG00000040148
Tissue enriched
Detected in many
retina:
98.0
na
ENSSSCG00000040295
ENSG00000167083
Tissue enriched
Detected in some
retina:
40.0
na
ENSSSCG00000040440
ENSG00000196431
Tissue enriched
Detected in single
lens:
572.1
na
ENSSSCG00000040649
Tissue enriched
Detected in single
lens:
4.5
na
ENSSSCG00000040757
Tissue enriched
Detected in some
lens:
20.7
NAGK
ENSSSCG00000008316
ENSG00000124357
N-acetylglucosamine kinase
Tissue enriched
Detected in all
lens:
122.9
NAMPT
ENSSSCG00000015435
ENSG00000105835
Nicotinamide phosphoribosyltransferase
Tissue enriched
Detected in all
lens:
169.3
NAP1L4
ENSSSCG00000012856
ENSG00000205531
Nucleosome assembly protein 1-like 4
Tissue enriched
Detected in all
lens:
155.7
NMNAT3
ENSSSCG00000031142
ENSG00000163864
Nicotinamide nucleotide adenylyltransferase 3
Tissue enriched
Detected in many
lens:
75.5
NR2E3
ENSSSCG00000004978
ENSG00000278570
Nuclear receptor subfamily 2 group E member 3
Tissue enriched
Detected in single
retina:
121.6
NRL
ENSSSCG00000002010
ENSG00000129535
Neural retina leucine zipper
Tissue enriched
Detected in single
retina:
119.4
NSFL1C
ENSSSCG00000007187
ENSG00000088833
NSFL1 cofactor p47
Tissue enriched
Detected in all
lens:
121.8
NT5DC2
ENSSSCG00000011444
ENSG00000168268
5'-nucleotidase domain containing 2
Tissue enriched
Detected in all
lens:
131.7
OPN1SW
ENSSSCG00000016580
ENSG00000128617
Short-wave-sensitive opsin 1
Tissue enriched
Detected in some
retina:
80.8
OPN5
ENSSSCG00000027863
ENSG00000124818
Opsin 5
Tissue enriched
Detected in some
retina:
28.3
OSGIN2
ENSSSCG00000021184
ENSG00000164823
Oxidative stress induced growth inhibitor family member 2
Tissue enriched
Detected in all
lens:
91.5
PALM
ENSSSCG00000039575
ENSG00000099864
Paralemmin-1
Tissue enriched
Detected in all
lens:
205.3
PALM2
ENSSSCG00000033120
ENSG00000157654,ENSG00000241978
A-kinase anchor protein 2
Tissue enriched
Detected in all
lens:
233.6
PARK7
ENSSSCG00000003385
ENSG00000116288
Protein DJ-1
Tissue enriched
Detected in all
lens:
158.3
PDE6A
ENSSSCG00000014438
ENSG00000132915
Phosphodiesterase 6A
Tissue enriched
Detected in some
retina:
121.5
PDE6B
ENSSSCG00000036645
ENSG00000133256
Phosphodiesterase 6B
Tissue enriched
Detected in some
retina:
82.0
PDE6G
ENSSSCG00000037638
ENSG00000185527
Phosphodiesterase 6G
Tissue enriched
Detected in some
retina:
389.8
PDE6H
ENSSSCG00000035399
ENSG00000139053
Retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma
Tissue enriched
Detected in some
retina:
129.4
PEA15
ENSSSCG00000032164
ENSG00000162734
Proliferation and apoptosis adaptor protein 15
Tissue enriched
Detected in all
lens:
683.5
PELI3
ENSSSCG00000012944
ENSG00000174516
Pellino E3 ubiquitin protein ligase family member 3
Tissue enriched
Detected in all
lens:
45.5
PHAX
ENSSSCG00000014244
ENSG00000164902
Phosphorylated adaptor for RNA export
Tissue enriched
Detected in all
lens:
61.9
PITX3
ENSSSCG00000010578
ENSG00000107859
Paired like homeodomain 3
Tissue enriched
Detected in some
lens:
102.7
PLIN3
ENSSSCG00000038954
ENSG00000105355
Perilipin-3
Tissue enriched
Detected in all
lens:
114.2
PNPLA3
ENSSSCG00000027266
ENSG00000100344
Patatin-like phospholipase domain-containing protein 3
Tissue enriched
Detected in some
lens:
35.6
POLM
ENSSSCG00000016755
ENSG00000122678
DNA polymerase mu
Tissue enriched
Detected in all
cornea:
92.9
PPEF2
ENSSSCG00000008972
ENSG00000156194
Protein phosphatase with EF-hand domain 2
Tissue enriched
Detected in some
retina:
61.0
PPM1N
ENSSSCG00000037001
ENSG00000213889
Protein phosphatase, Mg2+/Mn2+ dependent 1N (putative)
Tissue enriched
Detected in many
retina:
35.1
PRCD
ENSSSCG00000028604
ENSG00000214140
Photoreceptor disc component
Tissue enriched
Detected in many
retina:
128.9
PRDM13
ENSSSCG00000004354
ENSG00000112238
PR/SET domain 13
Tissue enriched
Detected in some
retina:
18.0
PRPH2
ENSSSCG00000031628
ENSG00000112619
Peripherin 2
Tissue enriched
Detected in some
retina:
201.7
PRR5
ENSSSCG00000021748
ENSG00000186654
Proline-rich protein 5
Tissue enriched
Detected in many
lens:
105.4
PRR7
ENSSSCG00000040698
ENSG00000131188
Proline rich 7, synaptic
Tissue enriched
Detected in many
lens:
53.2
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