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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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249 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DNMBP
ENSSSCG00000010544
ENSG00000107554
Dynamin binding protein
Tissue enriched
Detected in all
lens:
96.5
DOCK5
ENSSSCG00000009650
ENSG00000147459
Dedicator of cytokinesis 5
Tissue enriched
Detected in many
lens:
100.0
DOK4
ENSSSCG00000029165
ENSG00000125170
Docking protein 4
Tissue enriched
Detected in all
lens:
53.0
DRD4
ENSSSCG00000012851
ENSG00000069696
Dopamine receptor D4
Tissue enriched
Detected in some
retina:
113.1
ENO1
ENSSSCG00000022343
ENSG00000074800
Enolase 1
Tissue enriched
Detected in all
lens:
358.5
ERI1
ENSSSCG00000033634
ENSG00000104626
Exoribonuclease 1
Tissue enriched
Detected in all
lens:
57.1
EXOC1L
ENSSSCG00000022882
ENSG00000250821
Exocyst complex component 1 like
Tissue enriched
Detected in some
lens:
31.7
FABP5
ENSSSCG00000006153
ENSG00000164687
Fatty acid-binding protein, epidermal
Tissue enriched
Detected in many
lens:
391.5
FAM149A
ENSSSCG00000015802
ENSG00000109794
Family with sequence similarity 149 member A
Tissue enriched
Detected in many
lens:
125.8
FAM83A
ENSSSCG00000005986
ENSG00000147689
Family with sequence similarity 83 member A
Tissue enriched
Detected in many
cornea:
59.3
FIGLA
ENSSSCG00000008321
ENSG00000183733
Folliculogenesis specific bHLH transcription factor
Tissue enriched
Detected in some
retina:
12.0
FOXE3
ENSSSCG00000003884
ENSG00000186790
Forkhead box E3
Tissue enriched
Detected in some
lens:
18.8
FRMPD1
ENSSSCG00000005352
ENSG00000070601
FERM and PDZ domain containing 1
Tissue enriched
Detected in some
retina:
50.7
GABRR2
ENSSSCG00000024249
ENSG00000111886
Gamma-aminobutyric acid type A receptor rho2 subunit
Tissue enriched
Detected in some
retina:
66.0
GJA3
ENSSSCG00000036798
ENSG00000121743
Gap junction protein alpha 3
Tissue enriched
Detected in some
lens:
142.9
GJA8
ENSSSCG00000036239
ENSG00000121634
Gap junction protein alpha 8
Tissue enriched
Detected in single
lens:
215.0
GJE1
ENSSSCG00000034307
ENSG00000203733
Gap junction protein epsilon 1
Tissue enriched
Detected in single
lens:
28.5
GNAI2
ENSSSCG00000011399
ENSG00000114353
Guanine nucleotide-binding protein G(i) subunit alpha-2
Tissue enriched
Detected in all
retina:
275.2
GNAT2
ENSSSCG00000006823
ENSG00000134183
G protein subunit alpha transducin 2
Tissue enriched
Detected in all
retina:
68.6
GNL3L
ENSSSCG00000012336
ENSG00000130119
G protein nucleolar 3 like
Tissue enriched
Detected in all
lens:
61.7
GPHA2
ENSSSCG00000013015
ENSG00000149735
Glycoprotein hormone alpha 2
Tissue enriched
Detected in some
cornea:
83.9
GPR142
ENSSSCG00000027923
ENSG00000257008
G protein-coupled receptor 142
Tissue enriched
Detected in some
retina:
8.2
GRIFIN
ENSSSCG00000007569
ENSG00000275572
Grifin
Tissue enriched
Detected in some
lens:
1138.2
GRK1
ENSSSCG00000009562
ENSG00000185974
G protein-coupled receptor kinase 1
Tissue enriched
Detected in some
retina:
73.2
GRK6
ENSSSCG00000035028
ENSG00000198055
G protein-coupled receptor kinase 6
Tissue enriched
Detected in all
lens:
136.1
GRK7
ENSSSCG00000011675
ENSG00000114124
Rhodopsin kinase
Tissue enriched
Detected in some
retina:
39.3
GSS
ENSSSCG00000007287
ENSG00000100983
Glutathione synthetase
Tissue enriched
Detected in all
lens:
109.2
GUCA1A
ENSSSCG00000001636
ENSG00000048545
Guanylate cyclase activator 1A
Tissue enriched
Detected in some
retina:
88.0
GUCA1B
ENSSSCG00000001637
ENSG00000112599
Guanylate cyclase activator 1B
Tissue enriched
Detected in some
retina:
65.9
GUCY2D
ENSSSCG00000025345
ENSG00000132518
Guanylate cyclase 2D, retinal
Tissue enriched
Detected in some
retina:
64.3
HLCS
ENSSSCG00000012059
ENSG00000159267
Holocarboxylase synthetase
Tissue enriched
Detected in all
lens:
137.6
HMX1
ENSSSCG00000008720
ENSG00000215612
H6 family homeobox 1
Tissue enriched
Detected in some
lens:
39.2
HSPB11
ENSSSCG00000026264
ENSG00000081870
Heat shock protein family B (small) member 11
Tissue enriched
Detected in all
lens:
77.9
IMPG1
ENSSSCG00000004477
ENSG00000112706
Interphotoreceptor matrix proteoglycan 1
Tissue enriched
Detected in single
retina:
109.5
INTS13
ENSSSCG00000030443
ENSG00000064102
Protein asunder homolog
Tissue enriched
Detected in all
lens:
78.8
IPO8
ENSSSCG00000000534
ENSG00000133704
Importin 8
Tissue enriched
Detected in all
lens:
78.3
KCNB1
ENSSSCG00000007462
ENSG00000158445
Potassium voltage-gated channel subfamily B member 1
Tissue enriched
Detected in many
retina:
78.5
KCNJ14
ENSSSCG00000003135
ENSG00000182324
Potassium voltage-gated channel subfamily J member 14
Tissue enriched
Detected in some
retina:
49.7
KERA
ENSSSCG00000000917
ENSG00000139330
Keratocan
Tissue enriched
Detected in many
cornea:
288.6
KIAA1024
ENSSSCG00000001775
ENSG00000169330
KIAA1024
Tissue enriched
Detected in all
lens:
56.1
KLHL25
ENSSSCG00000002258
ENSG00000183655
Kelch like family member 25
Tissue enriched
Detected in many
lens:
96.2
KRT12
ENSSSCG00000017460
ENSG00000187242
Keratin 12
Tissue enriched
Detected in single
cornea:
786.3
KRT3
ENSSSCG00000023254
ENSG00000186442
Keratin 3
Tissue enriched
Detected in some
cornea:
465.8
LACTBL1
ENSSSCG00000003529
ENSG00000215906
Lactamase beta like 1
Tissue enriched
Detected in single
retina:
31.7
LCTL
ENSSSCG00000004947
ENSG00000188501
Lactase like
Tissue enriched
Detected in single
lens:
232.6
LGSN
ENSSSCG00000004450
ENSG00000146166
Lengsin, lens protein with glutamine synthetase domain
Tissue enriched
Detected in single
lens:
570.2
LIM2
ENSSSCG00000003232
ENSG00000105370
Lens intrinsic membrane protein 2
Tissue enriched
Detected in single
lens:
628.1
LRIT1
ENSSSCG00000034402
ENSG00000148602
Leucine rich repeat, Ig-like and transmembrane domains 1
Tissue enriched
Detected in all
retina:
50.8
LRIT2
ENSSSCG00000010347
ENSG00000204033
Leucine rich repeat, Ig-like and transmembrane domains 2
Tissue enriched
Detected in single
retina:
63.0
LRIT3
ENSSSCG00000009135
ENSG00000183423
Leucine rich repeat, Ig-like and transmembrane domains 3
Tissue enriched
Detected in many
retina:
49.8
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