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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Skin diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000002857
ENSG00000173809
Tissue enhanced
Detected in many
testis:
30.3
na
ENSSSCG00000002860
ENSG00000105185
Tissue enhanced
Detected in all
lens:
85.9
na
ENSSSCG00000002880
Tissue enhanced
Detected in many
epididymis:
9.5
male glands:
8.4
na
ENSSSCG00000002883
ENSG00000161249
Group enriched
Detected in some
cornea:
97.5
skin:
48.2
na
ENSSSCG00000002898
ENSG00000267796
Protein lin-37 homolog
Tissue enhanced
Detected in many
skeletal muscle:
133.0
smooth muscle:
143.5
na
ENSSSCG00000002903
Tissue enriched
Detected in many
testis:
73.3
na
ENSSSCG00000002907
ENSG00000126267
Cytochrome c oxidase subunit 6B1
Tissue enhanced
Detected in all
skeletal muscle:
101.0
na
ENSSSCG00000002921
ENSG00000105270
Tissue enhanced
Detected in many
brain:
48.9
lens:
46.1
pineal gland:
35.0
na
ENSSSCG00000002941
Tissue enhanced
Detected in all
epididymis:
41.6
na
ENSSSCG00000002944
Tissue enriched
Detected in single
testis:
35.0
na
ENSSSCG00000002968
ENSG00000161243
Tissue enhanced
Detected in some
bone marrow:
1.8
fallopian tube:
2.1
na
ENSSSCG00000002969
ENSG00000161243
Tissue enhanced
Detected in many
salivary gland:
8.0
na
ENSSSCG00000002980
Tissue enriched
Detected in some
male glands:
2217.0
na
ENSSSCG00000002997
ENSG00000261857
Tissue enriched
Detected in some
cartilage:
161.2
na
ENSSSCG00000003011
Tissue enriched
Detected in some
large intestine:
181.3
na
ENSSSCG00000003012
Tissue enhanced
Detected in all
choroid plexus:
23.6
na
ENSSSCG00000003043
Tissue enriched
Detected in some
testis:
43.2
na
ENSSSCG00000003045
ENSG00000105409
Sodium/potassium-transporting ATPase subunit alpha-3
Group enriched
Detected in some
brain:
82.1
pineal gland:
64.1
retina:
91.4
na
ENSSSCG00000003047
Tissue enriched
Detected in some
large intestine:
291.6
na
ENSSSCG00000003048
ENSG00000189377
Group enriched
Detected in some
lung:
91.0
stomach:
46.7
upper respiratory system:
98.0
na
ENSSSCG00000003049
ENSG00000268041
Tissue enhanced
Detected in many
cartilage:
24.1
lymphoid tissue:
27.8
na
ENSSSCG00000003051
ENSG00000204936
Group enriched
Detected in some
bone marrow:
50.2
dura mater:
37.7
na
ENSSSCG00000003052
ENSG00000131126
Tissue enriched
Detected in many
testis:
72.6
na
ENSSSCG00000003079
ENSG00000073008
Tissue enhanced
Detected in all
cartilage:
35.6
ovary:
35.6
na
ENSSSCG00000003080
ENSG00000216588
Tissue enhanced
Detected in some
large intestine:
16.8
ovary:
33.9
small intestine:
27.1
na
ENSSSCG00000003166
Tissue enhanced
Detected in many
cornea:
11.2
mouth:
8.6
skin:
10.7
na
ENSSSCG00000003225
ENSG00000213822
Tissue enhanced
Detected in many
large intestine:
15.4
small intestine:
38.8
na
ENSSSCG00000003226
ENSG00000105383
Tissue enriched
Detected in many
lymphoid tissue:
45.2
na
ENSSSCG00000003227
ENSG00000142549
Group enriched
Detected in some
adrenal gland:
14.7
brain:
12.6
lymphoid tissue:
6.4
pineal gland:
5.3
na
ENSSSCG00000003230
ENSG00000160318
Tissue enhanced
Detected in many
heart:
26.0
testis:
60.7
na
ENSSSCG00000003234
Tissue enriched
Detected in some
testis:
90.0
na
ENSSSCG00000003236
ENSG00000105492
Tissue enriched
Detected in many
lymphoid tissue:
49.8
na
ENSSSCG00000003243
ENSG00000256087
Tissue enriched
Detected in many
testis:
55.2
na
ENSSSCG00000003247
Tissue enriched
Detected in some
dura mater:
10.0
na
ENSSSCG00000003248
Tissue enhanced
Detected in some
dura mater:
6.5
lymphoid tissue:
6.5
na
ENSSSCG00000003261
ENSG00000170906
Tissue enhanced
Detected in all
skeletal muscle:
153.6
na
ENSSSCG00000003272
Tissue enhanced
Detected in many
ovary:
6.9
na
ENSSSCG00000003278
Leukocyte immunoglobulin-like receptor subfamily B member 3-like isoform 1 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
25.0
na
ENSSSCG00000003286
Tissue enhanced
Detected in some
lymphoid tissue:
5.1
testis:
4.9
na
ENSSSCG00000003311
ENSG00000140650
Tissue enriched
Detected in single
retina:
3.9
na
ENSSSCG00000003325
Group enriched
Detected in some
brain:
60.2
pituitary gland:
15.6
na
ENSSSCG00000003326
ENSG00000198300
Tissue enhanced
Detected in all
brain:
42.8
kidney:
27.9
pituitary gland:
36.3
na
ENSSSCG00000003367
Tissue enhanced
Detected in some
epididymis:
2.9
heart:
2.6
male glands:
4.0
na
ENSSSCG00000003444
Tissue enriched
Detected in single
heart:
1.8
na
ENSSSCG00000003448
Tissue enriched
Detected in some
epididymis:
5.8
na
ENSSSCG00000003451
ENSG00000162493
Tissue enhanced
Detected in many
cartilage:
53.1
na
ENSSSCG00000003476
ENSG00000187144
Tissue enriched
Detected in some
testis:
41.5
na
ENSSSCG00000003483
ENSG00000159339
Tissue enhanced
Detected in all
dura mater:
17.4
na
ENSSSCG00000003495
Tissue enhanced
Detected in single
testis:
2.7
na
ENSSSCG00000003521
Protein Wnt-4
Tissue enhanced
Detected in many
cornea:
49.8
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