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Human disease related genes
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UMAP gene cluster
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Biological process
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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16
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MYLK4
ENSSSCG00000028777
ENSG00000145949
Myosin light chain kinase family member 4
Tissue enhanced
Detected in all
male glands:
34.9
skeletal muscle:
22.4
MYLPF
ENSSSCG00000007799
ENSG00000180209
Myosin regulatory light chain 2, skeletal muscle isoform
Tissue enriched
Detected in some
skeletal muscle:
876.7
MYMK
ENSSSCG00000022891
ENSG00000187616
Myomaker, myoblast fusion factor
Tissue enhanced
Detected in many
heart:
28.3
liver:
14.1
MYO15A
ENSSSCG00000032392
ENSG00000091536
Myosin XVA
Tissue enhanced
Detected in many
brain:
6.5
mesothelial tissue:
6.9
MYO16
ENSSSCG00000009543
ENSG00000041515
Myosin XVI
Tissue enhanced
Detected in some
brain:
36.7
lens:
16.1
liver:
11.6
pineal gland:
12.5
retina:
11.4
MYO18B
ENSSSCG00000009957
ENSG00000133454
Myosin XVIIIB
Group enriched
Detected in some
heart:
26.2
skeletal muscle:
58.3
MYO19
ENSSSCG00000017682
ENSG00000278259
Myosin XIX
Tissue enhanced
Detected in many
salivary gland:
23.0
MYO1A
ENSSSCG00000000413
ENSG00000166866
Myosin IA
Group enriched
Detected in some
large intestine:
48.4
small intestine:
84.4
stomach:
26.2
MYO1B
ENSSSCG00000016061
ENSG00000128641
Myosin IB
Tissue enhanced
Detected in all
lens:
79.8
male glands:
71.5
MYO1D
ENSSSCG00000017728
ENSG00000176658
Myosin ID
Tissue enhanced
Detected in many
cartilage:
55.8
MYO1G
ENSSSCG00000016742
ENSG00000136286
Myosin IG
Tissue enhanced
Detected in many
lung:
16.4
lymphoid tissue:
39.0
stomach:
20.4
MYO1H
ENSSSCG00000009935
ENSG00000174527
Myosin IH
Tissue enhanced
Detected in some
kidney:
3.9
male glands:
6.8
MYO3A
ENSSSCG00000011059
ENSG00000095777
Myosin IIIA
Tissue enhanced
Detected in some
lymphoid tissue:
12.9
salivary gland:
20.6
MYO3B
ENSSSCG00000032177
ENSG00000071909
Myosin IIIB
Group enriched
Detected in some
epididymis:
84.2
retina:
24.6
MYO5A
ENSSSCG00000004620
ENSG00000197535
CAMP-regulated phosphoprotein 19
Tissue enhanced
Detected in all
brain:
69.8
MYO5B
ENSSSCG00000004511
ENSG00000167306
Myosin VB
Tissue enhanced
Detected in many
lens:
59.4
MYO5C
ENSSSCG00000004621
ENSG00000128833
Myosin VC
Tissue enhanced
Detected in many
male glands:
56.6
salivary gland:
39.5
MYO7A
ENSSSCG00000014876
ENSG00000137474
Unconventional myosin-VIIa
Tissue enhanced
Detected in many
adrenal gland:
29.3
kidney:
37.4
MYO7B
ENSSSCG00000015864
ENSG00000169994
Myosin VIIB
Group enriched
Detected in some
large intestine:
60.4
small intestine:
45.6
MYOC
ENSSSCG00000035066
ENSG00000034971
Myocilin precursor
Tissue enhanced
Detected in many
adipose tissue:
25.0
aorta:
25.1
cartilage:
31.5
penis:
25.0
MYOCD
ENSSSCG00000031988
ENSG00000141052
Myocardin
Tissue enhanced
Detected in many
cervix:
26.2
endometrium:
28.2
heart:
30.6
MYOD1
ENSSSCG00000013375
ENSG00000129152
Myoblast determination protein 1
Group enriched
Detected in some
male glands:
11.1
mouth:
12.4
skeletal muscle:
33.6
MYOG
ENSSSCG00000034654
ENSG00000122180
Myogenin
Tissue enhanced
Detected in many
skeletal muscle:
27.7
MYOM1
ENSSSCG00000003693
ENSG00000101605
Myomesin 1
Group enriched
Detected in many
heart:
71.8
skeletal muscle:
130.9
MYOM3
ENSSSCG00000036534
ENSG00000142661
Myomesin 3
Tissue enhanced
Detected in some
heart:
56.2
male glands:
25.4
mouth:
21.6
skeletal muscle:
40.2
MYORG
ENSSSCG00000033196
ENSG00000164976
Myogenesis regulating glycosidase (putative)
Tissue enhanced
Detected in all
heart:
42.5
skeletal muscle:
45.8
MYOT
ENSSSCG00000014324
ENSG00000120729
Myotilin
Tissue enriched
Detected in some
skeletal muscle:
267.8
MYOZ1
ENSSSCG00000010304
ENSG00000177791
Myozenin-1
Tissue enriched
Detected in many
skeletal muscle:
328.6
MYOZ2
ENSSSCG00000032838
ENSG00000172399
Myozenin-2
Group enriched
Detected in some
heart:
148.5
skeletal muscle:
84.8
MYOZ3
ENSSSCG00000035729
ENSG00000164591
Myozenin-3
Tissue enriched
Detected in some
skeletal muscle:
137.5
MYPN
ENSSSCG00000029311
ENSG00000138347
Myopalladin
Group enriched
Detected in some
heart:
33.4
skeletal muscle:
112.0
MYRF
ENSSSCG00000013078
ENSG00000124920
Myelin regulatory factor
Group enriched
Detected in many
adipose tissue:
28.3
brain:
62.5
gallbladder:
23.3
mesothelial tissue:
37.1
stomach:
55.6
MYRFL
ENSSSCG00000023936
ENSG00000166268
Myelin regulatory factor-like
Tissue enhanced
Detected in all
small intestine:
29.4
MYRIP
ENSSSCG00000011269
ENSG00000170011
Rab effector MyRIP
Tissue enhanced
Detected in many
male glands:
35.2
MYT1
ENSSSCG00000039212
ENSG00000196132
Myelin transcription factor 1
Tissue enhanced
Detected in some
brain:
27.3
pituitary gland:
8.0
retina:
15.7
MYT1L
ENSSSCG00000029334
ENSG00000186487
Myelin transcription factor 1 like
Group enriched
Detected in some
brain:
17.3
retina:
4.5
MYZAP
ENSSSCG00000004598
ENSG00000263155
Myocardial zonula adherens protein
Tissue enriched
Detected in many
heart:
68.8
MZB1
ENSSSCG00000029239
ENSG00000170476
Marginal zone B and B1 cell specific protein
Tissue enhanced
Detected in some
large intestine:
16.3
lung:
16.0
lymphoid tissue:
14.3
small intestine:
18.5
stomach:
20.8
upper respiratory system:
32.6
na
ENSSSCG00000000021
ENSG00000241484,ENSG00000248405
Rho GTPase-activating protein 8
Tissue enhanced
Detected in many
male glands:
34.8
salivary gland:
31.3
na
ENSSSCG00000000028
Tissue enhanced
Detected in many
lens:
18.8
testis:
45.5
na
ENSSSCG00000000071
Tissue enhanced
Detected in all
lens:
135.9
na
ENSSSCG00000000073
Tissue enhanced
Detected in many
epididymis:
13.6
liver:
13.8
na
ENSSSCG00000000081
ENSG00000176177
Tissue enhanced
Detected in all
testis:
32.3
na
ENSSSCG00000000148
Tissue enriched
Detected in all
lymphoid tissue:
51.8
na
ENSSSCG00000000151
ENSG00000221963
Group enriched
Detected in many
adipose tissue:
50.3
aorta:
12.9
bone marrow:
17.5
na
ENSSSCG00000000199
ENSG00000123352
Tissue enhanced
Detected in all
male glands:
58.9
na
ENSSSCG00000000238
Group enriched
Detected in some
adipose tissue:
9.4
skin:
17.1
na
ENSSSCG00000000239
Tissue enriched
Detected in single
skin:
274.8
na
ENSSSCG00000000245
ENSG00000170465,ENSG00000205420
Group enriched
Detected in some
mouth:
222.9
skin:
58.5
na
ENSSSCG00000000247
Tissue enriched
Detected in some
skin:
152.9
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