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Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LRRC72
ENSSSCG00000015361
ENSG00000205858
Leucine rich repeat containing 72
Tissue enriched
Detected in many
testis:
43.7
LRRC73
ENSSSCG00000001676
ENSG00000204052
Leucine rich repeat containing 73
Tissue enhanced
Detected in some
brain:
14.7
testis:
18.7
LRRC74A
ENSSSCG00000002391
ENSG00000100565
Leucine rich repeat containing 74A
Tissue enriched
Detected in single
testis:
18.5
LRRC75B
ENSSSCG00000010057
ENSG00000178026
Leucine rich repeat containing 75B
Tissue enhanced
Detected in many
lens:
17.5
male glands:
13.8
LRRC8B
ENSSSCG00000037101
ENSG00000197147
Leucine rich repeat containing 8 VRAC subunit B
Tissue enhanced
Detected in many
brain:
39.9
testis:
57.6
LRRC8C
ENSSSCG00000006917
ENSG00000171488
Leucine rich repeat containing 8 VRAC subunit C
Tissue enhanced
Detected in many
cartilage:
40.4
LRRC8E
ENSSSCG00000013586
ENSG00000171017
Leucine rich repeat containing 8 VRAC subunit E
Tissue enhanced
Detected in many
male glands:
21.2
LRRC9
ENSSSCG00000005081
ENSG00000131951
Leucine rich repeat containing 9
Tissue enhanced
Detected in some
choroid plexus:
41.8
fallopian tube:
28.1
testis:
14.7
LRRD1
ENSSSCG00000029092
ENSG00000240720
Leucine rich repeats and death domain containing 1
Group enriched
Detected in many
liver:
8.2
testis:
30.1
LRRFIP2
ENSSSCG00000027738
ENSG00000093167
LRR binding FLII interacting protein 2
Tissue enhanced
Detected in all
heart:
57.3
LRRIQ1
ENSSSCG00000000934
ENSG00000133640
Leucine rich repeats and IQ motif containing 1
Tissue enhanced
Detected in many
choroid plexus:
24.3
fallopian tube:
23.6
testis:
25.2
LRRIQ3
ENSSSCG00000003784
ENSG00000162620
Leucine rich repeats and IQ motif containing 3
Tissue enhanced
Detected in many
lens:
22.2
pineal gland:
23.6
LRRIQ4
ENSSSCG00000023679
ENSG00000188306
Leucine rich repeats and IQ motif containing 4
Tissue enriched
Detected in some
testis:
19.2
LRRK2
ENSSSCG00000000784
ENSG00000188906
Leucine-rich repeat serine/threonine-protein kinase 2
Tissue enhanced
Detected in all
lymphoid tissue:
45.3
LRRN1
ENSSSCG00000023806
ENSG00000175928
Leucine rich repeat neuronal 1
Group enriched
Detected in many
brain:
37.9
pineal gland:
27.7
LRRN2
ENSSSCG00000015285
ENSG00000170382
Leucine rich repeat neuronal 2
Group enriched
Detected in many
brain:
22.8
choroid plexus:
12.8
LRRN3
ENSSSCG00000016652
ENSG00000173114
Leucine rich repeat neuronal 3
Tissue enhanced
Detected in many
brain:
27.0
pituitary gland:
20.4
retina:
18.2
LRRN4
ENSSSCG00000007049
ENSG00000125872
Leucine rich repeat neuronal 4
Tissue enhanced
Detected in some
brain:
6.4
LRRN4CL
ENSSSCG00000024917
ENSG00000177363
LRRN4 C-terminal like
Tissue enhanced
Detected in many
aorta:
82.7
mesothelial tissue:
67.1
synovial tissue:
43.1
LRRTM1
ENSSSCG00000023859
ENSG00000162951
Leucine rich repeat transmembrane neuronal 1
Tissue enhanced
Detected in some
brain:
23.3
lens:
19.3
vagus nerve:
8.4
LRRTM2
ENSSSCG00000034989
ENSG00000146006
Leucine rich repeat transmembrane neuronal 2
Tissue enhanced
Detected in all
brain:
24.5
LRRTM3
ENSSSCG00000010232
ENSG00000198739
Leucine rich repeat transmembrane neuronal 3
Tissue enhanced
Detected in many
brain:
29.4
heart:
15.5
vagus nerve:
14.9
LRRTM4
ENSSSCG00000008259
ENSG00000176204
Leucine rich repeat transmembrane neuronal 4
Tissue enhanced
Detected in many
brain:
32.1
retina:
17.9
LRTM1
ENSSSCG00000011461
ENSG00000144771
Leucine rich repeats and transmembrane domains 1
Tissue enriched
Detected in some
retina:
32.1
LRTM2
ENSSSCG00000000760
ENSG00000166159
Leucine rich repeats and transmembrane domains 2
Group enriched
Detected in some
brain:
13.1
retina:
31.2
LSAMP
ENSSSCG00000027941
ENSG00000185565
Limbic system-associated membrane protein precursor
Tissue enhanced
Detected in many
brain:
36.5
lens:
68.9
lymphoid tissue:
29.3
pineal gland:
33.4
LSM12
ENSSSCG00000032394
ENSG00000161654
LSM12 homolog
Tissue enhanced
Detected in all
lens:
71.2
LSMEM2
ENSSSCG00000011401
ENSG00000179564
Leucine rich single-pass membrane protein 2
Tissue enhanced
Detected in many
heart:
22.2
vagus nerve:
20.8
LSP1
ENSSSCG00000031487
ENSG00000130592
Lymphocyte-specific protein 1
Tissue enhanced
Detected in many
lymphoid tissue:
85.3
LSS
ENSSSCG00000021418
ENSG00000160285
Lanosterol synthase
Tissue enhanced
Detected in all
liver:
70.7
LTA
ENSSSCG00000001403
ENSG00000226979
Lymphotoxin-alpha
Tissue enhanced
Detected in many
lymphoid tissue:
29.5
upper respiratory system:
8.7
LTB
ENSSSCG00000001405
ENSG00000227507
Lymphotoxin-beta
Tissue enriched
Detected in many
lymphoid tissue:
56.3
LTB4R
ENSSSCG00000027911
ENSG00000213903
Leukotriene B4 receptor
Tissue enhanced
Detected in many
dura mater:
8.1
lymphoid tissue:
7.8
ovary:
6.8
LTB4R2
ENSSSCG00000020941
ENSG00000213906
Leukotriene B4 receptor 2
Tissue enhanced
Detected in many
lymphoid tissue:
24.9
LTBP1
ENSSSCG00000008510
ENSG00000049323
Latent transforming growth factor beta binding protein 1
Tissue enhanced
Detected in many
cartilage:
91.5
ovary:
106.5
LTBP2
ENSSSCG00000002368
ENSG00000119681
Latent transforming growth factor beta binding protein 2
Tissue enhanced
Detected in many
mesothelial tissue:
67.7
LTBP3
ENSSSCG00000012985
ENSG00000168056
Latent transforming growth factor beta binding protein 3
Tissue enhanced
Detected in all
cartilage:
96.6
LTC4S
ENSSSCG00000028488
ENSG00000213316
Leukotriene C4 synthase
Tissue enhanced
Detected in many
liver:
56.7
lymphoid tissue:
21.7
LTF
ENSSSCG00000029879
ENSG00000012223
Lactotransferrin precursor
Group enriched
Detected in many
epididymis:
127.0
upper respiratory system:
186.6
LUM
ENSSSCG00000000916
ENSG00000139329
Lumican precursor
Tissue enhanced
Detected in many
cornea:
60.7
dura mater:
57.2
synovial tissue:
57.4
LURAP1
ENSSSCG00000026991
ENSG00000171357
Leucine rich adaptor protein 1
Tissue enhanced
Detected in many
brain:
47.6
vagus nerve:
22.9
LVRN
ENSSSCG00000014221
ENSG00000172901
Laeverin
Tissue enhanced
Detected in many
cervix:
13.8
vagus nerve:
30.0
LY6D
ENSSSCG00000037524
ENSG00000167656
Lymphocyte antigen 6 family member D
Group enriched
Detected in some
mouth:
60.2
skin:
33.4
upper respiratory system:
27.3
urinary bladder:
41.6
LY6G6C
ENSSSCG00000036566
ENSG00000204421
Lymphocyte antigen 6 family member G6C
Group enriched
Detected in some
cornea:
9.4
mouth:
31.3
skin:
15.0
testis:
33.3
LY6H
ENSSSCG00000033353
ENSG00000176956
Lymphocyte antigen 6 family member H
Tissue enriched
Detected in some
brain:
17.0
LY75
ENSSSCG00000021956
ENSG00000054219,ENSG00000248672
Lymphocyte antigen 75 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
56.9
LY86
ENSSSCG00000032355
ENSG00000112799
Lymphocyte antigen 86 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
46.7
LY9
ENSSSCG00000006375
ENSG00000122224
Lymphocyte antigen 9
Tissue enriched
Detected in many
lymphoid tissue:
54.7
LYAR
ENSSSCG00000008729
ENSG00000145220
Ly1 antibody reactive
Tissue enriched
Detected in all
testis:
65.7
LYG1
ENSSSCG00000037136
ENSG00000144214
Lysozyme g1
Tissue enhanced
Detected in some
brain:
1.8
ductus deferens:
3.3
testis:
1.3
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