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Subclass
Class
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LEFTY2
ENSSSCG00000032299
Left-right determination factor 2 precursor
Tissue enhanced
Detected in some
brain:
7.6
testis:
16.5
LEP
ENSSSCG00000040464
ENSG00000174697
Leptin precursor
Group enriched
Detected in some
adipose tissue:
22.8
aorta:
24.7
bone marrow:
23.7
testis:
14.5
LEPR
ENSSSCG00000025188
ENSG00000116678
Leptin receptor precursor
Tissue enhanced
Detected in many
bone marrow:
44.4
choroid plexus:
52.3
LETM2
ENSSSCG00000015816
ENSG00000165046
Leucine zipper and EF-hand containing transmembrane protein 2
Tissue enhanced
Detected in all
brain:
32.1
LEXM
ENSSSCG00000027362
ENSG00000162398
Lymphocyte expansion molecule
Tissue enhanced
Detected in some
fallopian tube:
7.6
testis:
19.5
LFNG
ENSSSCG00000007572
ENSG00000106003
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Tissue enhanced
Detected in all
male glands:
81.6
LGALS12
ENSSSCG00000013056
ENSG00000133317
Galectin-12
Tissue enhanced
Detected in all
adipose tissue:
46.2
LGALS13
ENSSSCG00000002983
ENSG00000105198,ENSG00000105205,ENSG00000249861
Galactoside-binding soluble lectin 13
Tissue enriched
Detected in some
upper respiratory system:
70.8
LGALS2
ENSSSCG00000021728
ENSG00000100079
Galectin-2
Tissue enriched
Detected in some
gallbladder:
273.1
LGALS3
ENSSSCG00000005055
ENSG00000131981
Galectin-3
Tissue enhanced
Detected in many
large intestine:
168.2
lens:
152.6
LGALS4
ENSSSCG00000022017
ENSG00000171747
Galectin-4
Tissue enhanced
Detected in some
large intestine:
131.5
mouth:
193.3
small intestine:
49.3
stomach:
77.7
LGALSL
ENSSSCG00000030005
ENSG00000119862
Galectin like
Tissue enhanced
Detected in all
cornea:
62.3
LGI2
ENSSSCG00000028927
ENSG00000153012
Leucine rich repeat LGI family member 2
Tissue enhanced
Detected in many
adipose tissue:
8.8
brain:
29.9
mesothelial tissue:
12.9
LGI3
ENSSSCG00000033355
ENSG00000168481
Leucine rich repeat LGI family member 3
Group enriched
Detected in many
brain:
31.7
vagus nerve:
9.8
LGI4
ENSSSCG00000025126
ENSG00000153902
Leucine rich repeat LGI family member 4
Tissue enhanced
Detected in many
vagus nerve:
94.2
LGMN
ENSSSCG00000002452
ENSG00000100600
Legumain
Tissue enhanced
Detected in all
kidney:
124.7
synovial tissue:
131.5
LGR4
ENSSSCG00000013335
ENSG00000205213
Leucine rich repeat containing G protein-coupled receptor 4
Tissue enhanced
Detected in many
stomach:
54.0
LGR5
ENSSSCG00000030511
ENSG00000139292
Leucine-rich repeat-containing G-protein coupled receptor 5 precursor
Tissue enhanced
Detected in many
skin:
34.4
LGSN
ENSSSCG00000004450
ENSG00000146166
Lengsin, lens protein with glutamine synthetase domain
Tissue enriched
Detected in single
lens:
570.2
LHFPL1
ENSSSCG00000012590
ENSG00000182508
LHFPL tetraspan subfamily member 1
Tissue enriched
Detected in some
male glands:
32.8
LHFPL2
ENSSSCG00000028536
ENSG00000145685
Lipoma HMGIC fusion partner-like 2 protein
Tissue enhanced
Detected in all
ovary:
66.1
LHFPL3
ENSSSCG00000035554
ENSG00000187416
LHFPL tetraspan subfamily member 3
Tissue enhanced
Detected in many
brain:
19.5
pineal gland:
52.9
retina:
54.9
LHFPL4
ENSSSCG00000011543
ENSG00000156959
LHFPL tetraspan subfamily member 4
Group enriched
Detected in some
brain:
17.3
pineal gland:
6.6
pituitary gland:
8.2
retina:
13.2
LHFPL5
ENSSSCG00000001553
ENSG00000197753
LHFPL tetraspan subfamily member 5
Tissue enhanced
Detected in some
brain:
8.5
epididymis:
9.7
pineal gland:
4.3
LHFPL6
ENSSSCG00000029855
ENSG00000183722
LHFPL tetraspan subfamily member 6
Tissue enhanced
Detected in all
cervix:
76.3
LHX1
ENSSSCG00000017692
ENSG00000273706
LIM homeobox 1
Group enriched
Detected in some
brain:
13.0
kidney:
25.7
male glands:
21.8
LHX2
ENSSSCG00000005586
ENSG00000106689
LIM/homeobox protein Lhx2
Tissue enhanced
Detected in some
brain:
29.0
pituitary gland:
11.4
retina:
10.0
skin:
21.3
LHX3
ENSSSCG00000034657
ENSG00000107187
LIM/homeobox protein Lhx3
Tissue enriched
Detected in some
pituitary gland:
34.8
LHX4
ENSSSCG00000015536
ENSG00000121454
LIM homeobox 4
Tissue enriched
Detected in some
pineal gland:
62.6
LHX6
ENSSSCG00000005530
ENSG00000106852
LIM homeobox 6
Tissue enhanced
Detected in many
cartilage:
32.4
LHX8
ENSSSCG00000003778
ENSG00000162624
LIM/homeobox protein Lhx8
Group enriched
Detected in some
adipose tissue:
18.4
brain:
12.0
esophagus:
10.8
lymphoid tissue:
14.8
mouth:
18.3
LHX9
ENSSSCG00000010903
ENSG00000143355
LIM homeobox 9
Tissue enhanced
Detected in some
brain:
30.1
cartilage:
9.3
pineal gland:
12.3
LIF
ENSSSCG00000040961
ENSG00000128342
Leukemia inhibitory factor precursor
Tissue enhanced
Detected in many
ovary:
35.1
stomach:
20.9
LIM2
ENSSSCG00000003232
ENSG00000105370
Lens intrinsic membrane protein 2
Tissue enriched
Detected in single
lens:
628.1
LIMCH1
ENSSSCG00000008799
ENSG00000064042
LIM and calponin homology domains 1
Tissue enhanced
Detected in all
vagus nerve:
77.2
LIMD2
ENSSSCG00000040509
ENSG00000136490
LIM domain-containing protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
51.5
LIMK1
ENSSSCG00000030378
ENSG00000106683
LIM domain kinase 1
Tissue enhanced
Detected in all
cartilage:
57.1
LIMS2
ENSSSCG00000015862
ENSG00000072163
LIM zinc finger domain containing 2
Tissue enhanced
Detected in many
smooth muscle:
121.2
LIN28A
ENSSSCG00000003557
Protein lin-28 homolog A
Tissue enhanced
Detected in many
skeletal muscle:
13.5
LIN28B
ENSSSCG00000037612
ENSG00000187772
Protein lin-28 homolog B precursor
Group enriched
Detected in some
brain:
3.1
pineal gland:
4.9
retina:
11.1
LIN7A
ENSSSCG00000040348
ENSG00000111052
Lin-7 homolog A, crumbs cell polarity complex component
Tissue enhanced
Detected in all
testis:
45.9
LIN7B
ENSSSCG00000003157
ENSG00000104863
Protein lin-7 homolog B
Tissue enhanced
Detected in all
brain:
26.5
lens:
21.6
LINC00483
ENSSSCG00000017556
ENSG00000167117
Long intergenic non-protein coding RNA 483
Tissue enriched
Detected in many
small intestine:
44.9
LINGO1
ENSSSCG00000001872
ENSG00000169783
Leucine rich repeat and Ig domain containing 1
Tissue enhanced
Detected in many
brain:
50.2
LINGO2
ENSSSCG00000033151
ENSG00000174482
Leucine rich repeat and Ig domain containing 2
Tissue enhanced
Detected in many
brain:
16.3
male glands:
15.3
vagus nerve:
13.1
LINGO3
ENSSSCG00000013462
ENSG00000220008
Leucine rich repeat and Ig domain containing 3
Group enriched
Detected in some
brain:
28.5
pineal gland:
7.1
retina:
8.8
LINGO4
ENSSSCG00000026259
ENSG00000213171
Leucine rich repeat and Ig domain containing 4
Tissue enriched
Detected in some
brain:
29.5
LINS1
ENSSSCG00000004820
ENSG00000140471
Lines homolog 1
Tissue enhanced
Detected in all
lens:
41.4
LIPA
ENSSSCG00000010450
ENSG00000107798
Lysosomal acid lipase/cholesteryl ester hydrolase precursor
Tissue enhanced
Detected in all
ovary:
84.6
LIPC
ENSSSCG00000004596
ENSG00000166035
Hepatic triacylglycerol lipase precursor
Group enriched
Detected in all
liver:
58.1
small intestine:
22.1
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