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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KRT20
ENSSSCG00000017459
ENSG00000171431
Keratin 20
Tissue enhanced
Detected in many
gallbladder:
36.3
large intestine:
157.2
small intestine:
66.8
KRT23
ENSSSCG00000024067
ENSG00000108244
Keratin 23
Group enriched
Detected in many
male glands:
46.0
salivary gland:
55.0
upper respiratory system:
26.1
KRT24
ENSSSCG00000017465
ENSG00000167916
Keratin 24
Tissue enriched
Detected in many
mouth:
79.2
KRT25
ENSSSCG00000017464
ENSG00000204897
Keratin 25
Tissue enriched
Detected in some
skin:
155.9
KRT27
ENSSSCG00000017462
ENSG00000171446
Keratin, type I cytoskeletal 27
Group enriched
Detected in many
brain:
37.1
skin:
80.0
KRT28
ENSSSCG00000017461
ENSG00000173908
Keratin 28
Tissue enriched
Detected in some
skin:
37.0
KRT3
ENSSSCG00000023254
ENSG00000186442
Keratin 3
Tissue enriched
Detected in some
cornea:
465.8
KRT31
ENSSSCG00000021668
Keratin 31
Tissue enriched
Detected in single
skin:
243.6
KRT32
ENSSSCG00000017439
ENSG00000108759
Keratin 32
Tissue enriched
Detected in some
skin:
89.3
KRT35
ENSSSCG00000017438
ENSG00000197079
Keratin 35
Tissue enriched
Detected in some
skin:
115.3
KRT36
ENSSSCG00000017437
ENSG00000126337
Keratin 36
Group enriched
Detected in some
mouth:
83.3
skin:
22.6
KRT39
ENSSSCG00000017458
ENSG00000196859
Keratin 39
Tissue enriched
Detected in some
skin:
36.2
KRT4
ENSSSCG00000024610
ENSG00000170477
Keratin 4
Group enriched
Detected in some
esophagus:
91.9
mouth:
354.0
KRT40
ENSSSCG00000036987
ENSG00000204889
Keratin 40
Tissue enhanced
Detected in many
skin:
31.6
KRT5
ENSSSCG00000000248
ENSG00000186081
Keratin 5
Group enriched
Detected in many
cornea:
115.8
mouth:
325.7
skin:
162.7
KRT7
ENSSSCG00000038966
ENSG00000135480
Keratin 7
Tissue enhanced
Detected in many
breast:
50.7
gallbladder:
38.2
salivary gland:
40.2
KRT72
ENSSSCG00000000249
ENSG00000170486
Keratin 72
Tissue enriched
Detected in single
skin:
25.7
KRT73
ENSSSCG00000000250
ENSG00000186049
Keratin 73
Tissue enriched
Detected in some
skin:
50.9
KRT74
ENSSSCG00000028334
ENSG00000170484
Keratin 74
Tissue enriched
Detected in some
skin:
37.9
KRT75
ENSSSCG00000000236
ENSG00000170454
Keratin 75
Tissue enriched
Detected in some
skin:
78.0
KRT77
ENSSSCG00000024092
ENSG00000189182
Keratin 77
Tissue enriched
Detected in single
skin:
187.5
KRT78
ENSSSCG00000036791
ENSG00000170423
Keratin 78
Tissue enriched
Detected in some
mouth:
131.9
KRT79
ENSSSCG00000027548
ENSG00000185640
Keratin 79
Tissue enriched
Detected in some
skin:
37.5
KRT8
ENSSSCG00000000252
ENSG00000170421
Keratin, type II cytoskeletal 8
Tissue enhanced
Detected in many
gallbladder:
64.3
large intestine:
167.1
stomach:
63.3
KRT80
ENSSSCG00000040636
ENSG00000167767
Keratin 80
Tissue enhanced
Detected in all
salivary gland:
44.8
KRT82
ENSSSCG00000000235
ENSG00000161850
Keratin 82
Tissue enriched
Detected in some
skin:
96.1
KRT84
ENSSSCG00000000241
ENSG00000161849
Keratin 84
Tissue enriched
Detected in single
mouth:
103.6
KRT85
ENSSSCG00000000240
ENSG00000135443
Keratin 85
Tissue enriched
Detected in some
skin:
167.0
KRTAP11-1
ENSSSCG00000038131
ENSG00000182591
Keratin associated protein 11-1
Tissue enriched
Detected in single
skin:
233.3
KRTAP24-1
ENSSSCG00000021804
ENSG00000188694
Keratin associated protein 24-1
Tissue enriched
Detected in some
skin:
100.3
KRTAP27-1
ENSSSCG00000029297
ENSG00000206107
Keratin associated protein 27-1
Tissue enriched
Detected in some
skin:
23.0
KRTAP3-1
ENSSSCG00000017450
ENSG00000212901
Keratin associated protein 3-1
Tissue enriched
Detected in some
skin:
559.8
KRTAP7-1
ENSSSCG00000027655
ENSG00000274749
Keratin associated protein 7-1 (gene/pseudogene)
Tissue enriched
Detected in some
skin:
11.6
KRTAP8-1
ENSSSCG00000021087
ENSG00000183640
Keratin associated protein 8-1
Tissue enriched
Detected in some
skin:
22.6
KRTDAP
ENSSSCG00000002882
ENSG00000188508
Keratinocyte differentiation associated protein
Group enriched
Detected in some
mouth:
24.6
skin:
52.3
KSR2
ENSSSCG00000009855
ENSG00000171435
Kinase suppressor of ras 2
Tissue enhanced
Detected in some
brain:
19.3
pineal gland:
12.2
pituitary gland:
21.3
retina:
9.7
KXD1
ENSSSCG00000013906
ENSG00000105700
KxDL motif containing 1
Tissue enhanced
Detected in all
lens:
166.0
KY
ENSSSCG00000011646
ENSG00000174611
Kyphoscoliosis peptidase
Group enriched
Detected in some
male glands:
27.5
mouth:
14.8
skeletal muscle:
40.0
KYAT1
ENSSSCG00000005663
ENSG00000171097
Kynurenine aminotransferase 1
Tissue enhanced
Detected in all
male glands:
29.7
KYNU
ENSSSCG00000015673
ENSG00000115919
Kynureninase
Tissue enhanced
Detected in many
breast:
25.1
liver:
44.6
L1CAM
ENSSSCG00000012787
ENSG00000198910
L1 cell adhesion molecule
Tissue enhanced
Detected in many
ductus deferens:
55.0
kidney:
58.6
vagus nerve:
52.3
L3MBTL1
ENSSSCG00000007365
ENSG00000185513
L3MBTL1, histone methyl-lysine binding protein
Tissue enhanced
Detected in many
brain:
14.6
epididymis:
17.9
L3MBTL3
ENSSSCG00000004203
ENSG00000198945
L3MBTL3, histone methyl-lysine binding protein
Tissue enhanced
Detected in all
cartilage:
41.4
L3MBTL4
ENSSSCG00000035553
ENSG00000154655
L3MBTL4, histone methyl-lysine binding protein
Tissue enhanced
Detected in many
lens:
9.7
pituitary gland:
9.9
salivary gland:
9.3
LACTB
ENSSSCG00000004569
ENSG00000103642
Serine beta-lactamase-like protein LACTB, mitochondrial
Tissue enhanced
Detected in all
adrenal gland:
36.1
liver:
32.5
LACTBL1
ENSSSCG00000003529
ENSG00000215906
Lactamase beta like 1
Tissue enriched
Detected in single
retina:
31.7
LAD1
ENSSSCG00000021624
ENSG00000159166
Ladinin 1
Tissue enhanced
Detected in many
large intestine:
29.5
small intestine:
25.5
stomach:
28.7
LAG3
ENSSSCG00000000688
ENSG00000089692
Lymphocyte activation gene 3 protein precursor
Tissue enhanced
Detected in many
cartilage:
22.4
lymphoid tissue:
18.4
LALBA
ENSSSCG00000024573
ENSG00000167531
Alpha-lactalbumin
Tissue enhanced
Detected in some
adipose tissue:
1.3
breast:
1.9
LAMA1
ENSSSCG00000034767
ENSG00000101680
Laminin subunit alpha 1
Group enriched
Detected in many
lens:
68.3
ovary:
34.5
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