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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
HOXA5
ENSSSCG00000016703
ENSG00000106004
Homeobox protein Hox-A5
Tissue enhanced
Detected in many
epididymis:
34.4
male glands:
42.7
HOXB1
ENSSSCG00000017532
ENSG00000120094
Homeobox B1
Tissue enriched
Detected in single
epididymis:
4.7
HOXB13
ENSSSCG00000017541
ENSG00000159184
Homeobox B13
Group enriched
Detected in some
large intestine:
46.2
male glands:
70.8
HOXB2
ENSSSCG00000017533
ENSG00000173917
Homeobox B2
Tissue enhanced
Detected in many
male glands:
48.0
HOXB3
ENSSSCG00000017534
ENSG00000120093
Homeobox B3
Tissue enhanced
Detected in many
male glands:
64.2
HOXB4
ENSSSCG00000017535
ENSG00000182742
Homeobox B4
Tissue enhanced
Detected in many
epididymis:
47.8
male glands:
83.5
HOXB5
ENSSSCG00000017540
ENSG00000120075
Homeobox B5
Tissue enhanced
Detected in many
epididymis:
17.9
male glands:
17.7
HOXB6
ENSSSCG00000017539
ENSG00000108511
Homeobox B6
Group enriched
Detected in many
epididymis:
55.3
male glands:
186.0
HOXB7
ENSSSCG00000017538
ENSG00000260027
Homeobox B7
Tissue enhanced
Detected in many
epididymis:
21.7
male glands:
15.6
HOXB8
ENSSSCG00000017537
ENSG00000120068
Homeobox B8
Tissue enhanced
Detected in many
epididymis:
62.0
male glands:
53.0
HOXB9
ENSSSCG00000039193
ENSG00000170689
Homeobox B9
Tissue enhanced
Detected in some
epididymis:
24.0
kidney:
24.0
large intestine:
28.2
male glands:
20.6
HOXC10
ENSSSCG00000022728
ENSG00000180818
Homeobox C10
Tissue enhanced
Detected in some
brain:
22.1
skeletal muscle:
54.7
HOXC11
ENSSSCG00000028104
ENSG00000123388
Homeobox C11
Tissue enhanced
Detected in some
ductus deferens:
20.2
kidney:
6.9
skeletal muscle:
12.9
urinary bladder:
8.6
HOXC12
ENSSSCG00000000281
ENSG00000123407
Homeobox C12
Tissue enriched
Detected in some
urinary bladder:
5.3
HOXC13
ENSSSCG00000000279
ENSG00000123364
Homeobox C13
Tissue enriched
Detected in some
skin:
50.4
HOXC4
ENSSSCG00000038993
ENSG00000198353
Homeobox C4
Tissue enhanced
Detected in many
epididymis:
15.2
fallopian tube:
26.2
skin:
30.8
HOXC6
ENSSSCG00000030585
ENSG00000197757
Homeobox C6
Tissue enhanced
Detected in many
breast:
26.7
kidney:
36.7
HOXC8
ENSSSCG00000038644
ENSG00000037965
Homeobox C8
Tissue enhanced
Detected in many
adrenal gland:
17.4
breast:
21.5
fallopian tube:
17.1
small intestine:
16.1
HOXC9
ENSSSCG00000034474
ENSG00000180806
Homeobox C9
Tissue enhanced
Detected in many
kidney:
20.9
skeletal muscle:
12.3
HOXD1
ENSSSCG00000015986
ENSG00000128645
Homeobox D1
Group enriched
Detected in some
brain:
8.6
kidney:
11.2
male glands:
23.8
HOXD10
ENSSSCG00000015981
ENSG00000128710
Homeobox D10
Tissue enhanced
Detected in many
ductus deferens:
17.4
male glands:
59.0
smooth muscle:
17.7
HOXD11
ENSSSCG00000034741
ENSG00000128713
Homeobox D11
Tissue enhanced
Detected in many
male glands:
55.2
smooth muscle:
21.6
urinary bladder:
18.8
HOXD12
ENSSSCG00000015980
ENSG00000170178
Homeobox D12
Tissue enhanced
Detected in some
male glands:
14.6
penis:
8.0
smooth muscle:
8.0
urinary bladder:
5.3
HOXD13
ENSSSCG00000015979
ENSG00000128714
Homeobox D13
Tissue enhanced
Detected in some
cervix:
20.0
large intestine:
11.3
male glands:
30.5
penis:
13.1
smooth muscle:
21.9
urinary bladder:
12.0
HOXD3
ENSSSCG00000015985
ENSG00000128652
Homeobox D3
Tissue enhanced
Detected in many
epididymis:
21.2
kidney:
23.0
male glands:
57.4
HOXD4
ENSSSCG00000015984
ENSG00000170166
Homeobox D4
Tissue enhanced
Detected in many
epididymis:
59.9
kidney:
38.0
male glands:
48.8
HOXD8
ENSSSCG00000040349
ENSG00000175879
Homeobox D8
Tissue enhanced
Detected in many
adrenal gland:
26.3
cartilage:
24.8
epididymis:
42.1
HOXD9
ENSSSCG00000015982
ENSG00000128709
Homeobox D9
Tissue enhanced
Detected in many
cartilage:
40.7
epididymis:
30.9
kidney:
34.1
male glands:
31.3
HPCA
ENSSSCG00000032664
ENSG00000121905
Neuron-specific calcium-binding protein hippocalcin
Tissue enriched
Detected in some
brain:
171.1
HPCAL1
ENSSSCG00000003663
ENSG00000115756
Hippocalcin-like protein 1
Tissue enhanced
Detected in all
brain:
70.4
HPCAL4
ENSSSCG00000023460
ENSG00000116983
Hippocalcin-like protein 4
Tissue enriched
Detected in some
brain:
65.9
HPD
ENSSSCG00000009805
ENSG00000158104
4-hydroxyphenylpyruvate dioxygenase
Tissue enriched
Detected in some
liver:
217.9
HPDL
ENSSSCG00000003920
ENSG00000186603
4-hydroxyphenylpyruvate dioxygenase like
Tissue enriched
Detected in single
brain:
6.7
HPGDS
ENSSSCG00000009194
ENSG00000163106
Hematopoietic prostaglandin D synthase
Tissue enhanced
Detected in many
lymphoid tissue:
17.0
skin:
15.4
HPN
ENSSSCG00000021867
ENSG00000105707
Hepsin
Group enriched
Detected in all
kidney:
43.4
liver:
93.6
male glands:
36.2
HPSE
ENSSSCG00000009237
ENSG00000173083
Heparanase precursor
Tissue enhanced
Detected in all
lymphoid tissue:
34.9
HPSE2
ENSSSCG00000010535
ENSG00000172987
Heparanase 2 (inactive)
Tissue enriched
Detected in many
cervix:
86.3
HPX
ENSSSCG00000014626
ENSG00000110169
Hemopexin precursor
Tissue enriched
Detected in some
liver:
339.3
HR
ENSSSCG00000009616
ENSG00000168453
Lysine-specific demethylase hairless
Tissue enhanced
Detected in many
mouth:
21.3
skin:
49.7
HRAS
ENSSSCG00000031513
ENSG00000174775
HRas proto-oncogene, GTPase
Tissue enhanced
Detected in all
lens:
85.8
HRASLS5
ENSSSCG00000021482
ENSG00000168004
HRAS like suppressor family member 5
Tissue enriched
Detected in many
testis:
64.4
HRC
ENSSSCG00000003156
ENSG00000130528
Histidine rich calcium binding protein
Group enriched
Detected in some
heart:
69.8
skeletal muscle:
92.0
HRCT1
ENSSSCG00000035720
ENSG00000196196
Histidine rich carboxyl terminus 1
Tissue enhanced
Detected in many
penis:
46.2
HRG
ENSSSCG00000011801
ENSG00000113905
Histidine-rich glycoprotein precursor
Tissue enriched
Detected in some
liver:
413.6
HRH3
ENSSSCG00000038578
ENSG00000101180
Histamine receptor H3
Tissue enriched
Detected in some
brain:
24.0
HRK
ENSSSCG00000033216
ENSG00000135116
Harakiri, BCL2 interacting protein
Tissue enriched
Detected in many
cervix:
26.7
HS3ST1
ENSSSCG00000021515
ENSG00000002587
Heparan sulfate-glucosamine 3-sulfotransferase 1
Tissue enhanced
Detected in many
cartilage:
54.1
epididymis:
32.4
HS3ST4
ENSSSCG00000039406
ENSG00000182601
Heparan sulfate-glucosamine 3-sulfotransferase 4
Tissue enriched
Detected in some
brain:
17.4
HS3ST5
ENSSSCG00000004433
ENSG00000249853
Heparan sulfate-glucosamine 3-sulfotransferase 5
Tissue enhanced
Detected in many
adrenal gland:
11.0
brain:
21.2
ductus deferens:
14.5
kidney:
13.4
HS3ST6
ENSSSCG00000031216
ENSG00000162040
Heparan sulfate-glucosamine 3-sulfotransferase 6
Tissue enhanced
Detected in all
adipose tissue:
38.5
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