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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
HDAC6
ENSSSCG00000025545
ENSG00000094631
Histone deacetylase 6
Tissue enriched
Detected in all
kidney:
96.2
HDAC8
ENSSSCG00000021200
ENSG00000147099
Histone deacetylase 8
Tissue enhanced
Detected in all
male glands:
42.4
HDAC9
ENSSSCG00000015368
ENSG00000048052
Histone deacetylase 9
Tissue enhanced
Detected in all
cartilage:
53.6
HDHD2
ENSSSCG00000005771
ENSG00000167220
Haloacid dehalogenase like hydrolase domain containing 2
Tissue enhanced
Detected in all
brain:
33.3
HDHD3
ENSSSCG00000039861
ENSG00000119431
Haloacid dehalogenase like hydrolase domain containing 3
Tissue enhanced
Detected in all
kidney:
27.6
HDX
ENSSSCG00000038744
ENSG00000165259
Highly divergent homeobox
Tissue enhanced
Detected in some
brain:
13.3
pineal gland:
10.0
HEATR6
ENSSSCG00000038478
ENSG00000068097
HEAT repeat containing 6
Tissue enhanced
Detected in all
salivary gland:
81.5
HEATR9
ENSSSCG00000017706
ENSG00000270379
HEAT repeat containing 9
Group enriched
Detected in many
choroid plexus:
8.2
testis:
22.9
HEBP1
ENSSSCG00000040275
ENSG00000013583
Heme-binding protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
31.5
male glands:
38.7
HECTD2
ENSSSCG00000020912
ENSG00000165338
HECT domain E3 ubiquitin protein ligase 2
Tissue enhanced
Detected in many
brain:
43.7
male glands:
22.5
HECW1
ENSSSCG00000036443
ENSG00000002746
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
Group enriched
Detected in some
brain:
17.4
kidney:
27.3
pineal gland:
14.3
retina:
9.4
HELT
ENSSSCG00000038390
ENSG00000187821
Helt bHLH transcription factor
Tissue enhanced
Detected in some
ductus deferens:
4.9
endometrium:
4.1
epididymis:
19.1
HELZ2
ENSSSCG00000003306
ENSG00000130589
Helicase with zinc finger 2
Tissue enriched
Detected in some
epididymis:
7.6
HEMGN
ENSSSCG00000005371
ENSG00000136929
Hemogen
Tissue enriched
Detected in all
testis:
93.2
HENMT1
ENSSSCG00000006846
ENSG00000162639
HEN methyltransferase 1
Tissue enhanced
Detected in many
testis:
20.5
HEPACAM
ENSSSCG00000015205
ENSG00000165478
Hepatic and glial cell adhesion molecule
Tissue enhanced
Detected in all
pituitary gland:
137.0
HEPACAM2
ENSSSCG00000025870
ENSG00000188175
HEPACAM family member 2
Tissue enhanced
Detected in all
large intestine:
36.4
pituitary gland:
41.9
HEPH
ENSSSCG00000012363
ENSG00000089472
Hephaestin
Group enriched
Detected in some
large intestine:
30.8
pituitary gland:
10.2
small intestine:
19.9
HEPHL1
ENSSSCG00000030461
ENSG00000181333
Hephaestin like 1
Tissue enriched
Detected in some
skin:
54.6
HES1
ENSSSCG00000031356
ENSG00000114315
Transcription factor HES-1
Tissue enhanced
Detected in all
urinary bladder:
45.1
HES2
ENSSSCG00000034297
ENSG00000069812
Hes family bHLH transcription factor 2
Tissue enhanced
Detected in many
epididymis:
27.7
HES3
ENSSSCG00000003370
ENSG00000173673
Hes family bHLH transcription factor 3
Tissue enhanced
Detected in some
brain:
7.0
retina:
5.2
HES5
ENSSSCG00000037304
ENSG00000197921
Hes family bHLH transcription factor 5
Tissue enhanced
Detected in some
brain:
11.4
lens:
3.1
retina:
3.8
HES6
ENSSSCG00000016342
ENSG00000144485
Hes family bHLH transcription factor 6
Tissue enhanced
Detected in many
adipose tissue:
24.4
HES7
ENSSSCG00000017982
ENSG00000179111
Hes family bHLH transcription factor 7
Tissue enhanced
Detected in many
cartilage:
9.3
epididymis:
7.2
HEXB
ENSSSCG00000014073
ENSG00000049860
Hexosaminidase subunit beta
Group enriched
Detected in many
epididymis:
222.2
male glands:
59.9
HEY2
ENSSSCG00000004223
ENSG00000135547
Hairy/enhancer-of-split related with YRPW motif protein 2
Tissue enhanced
Detected in many
heart:
20.6
penis:
24.7
HFE
ENSSSCG00000037682
ENSG00000010704
Hemochromatosis
Tissue enhanced
Detected in all
choroid plexus:
41.3
HGD
ENSSSCG00000021227
ENSG00000113924
Homogentisate 1,2-dioxygenase
Tissue enriched
Detected in many
liver:
91.2
HGF
ENSSSCG00000015403
ENSG00000019991
Hepatocyte growth factor
Tissue enhanced
Detected in many
liver:
19.6
HGFAC
ENSSSCG00000008700
ENSG00000109758
HGF activator
Tissue enriched
Detected in many
liver:
93.5
HHAT
ENSSSCG00000015607
ENSG00000054392
Hedgehog acyltransferase
Tissue enhanced
Detected in all
testis:
31.8
HHATL
ENSSSCG00000011287
ENSG00000010282
Hedgehog acyltransferase like
Group enriched
Detected in some
heart:
31.6
skeletal muscle:
48.9
HHEX
ENSSSCG00000036314
ENSG00000152804
Hematopoietically-expressed homeobox protein HHEX
Tissue enhanced
Detected in many
thyroid gland:
19.5
HHIP
ENSSSCG00000009045
ENSG00000164161
Hedgehog interacting protein
Tissue enhanced
Detected in many
cartilage:
79.0
lymphoid tissue:
59.2
HHIPL1
ENSSSCG00000022794
ENSG00000182218
HHIP like 1
Tissue enhanced
Detected in many
cartilage:
64.4
HHIPL2
ENSSSCG00000010832
ENSG00000143512
HHIP like 2
Group enriched
Detected in many
cartilage:
71.0
synovial tissue:
27.8
HHLA1
ENSSSCG00000022257
ENSG00000132297
HERV-H LTR-associating 1
Tissue enhanced
Detected in some
brain:
1.9
retina:
1.3
skin:
2.2
HHLA2
ENSSSCG00000027275
ENSG00000114455
HERV-H LTR-associating 2
Group enriched
Detected in all
kidney:
61.9
large intestine:
31.9
liver:
58.9
small intestine:
46.3
HID1
ENSSSCG00000017219
ENSG00000167861
HID1 domain containing
Tissue enhanced
Detected in many
male glands:
54.1
stomach:
43.9
HIF1A
ENSSSCG00000005096
ENSG00000100644
Hypoxia-inducible factor 1-alpha
Tissue enhanced
Detected in all
cartilage:
106.3
HIF3A
ENSSSCG00000003101
ENSG00000124440
Hypoxia inducible factor 3 alpha subunit
Tissue enhanced
Detected in many
breast:
38.6
heart:
44.0
HIKESHI
ENSSSCG00000021210
ENSG00000149196
Hikeshi, heat shock protein nuclear import factor
Tissue enhanced
Detected in all
lens:
60.3
HIPK3
ENSSSCG00000013312
ENSG00000110422
Homeodomain interacting protein kinase 3
Tissue enhanced
Detected in all
lens:
111.4
HIPK4
ENSSSCG00000021917
ENSG00000160396
Homeodomain interacting protein kinase 4
Tissue enriched
Detected in many
testis:
55.0
HIST1H1D
ENSSSCG00000001137
ENSG00000124575
Histone cluster 1 H1 family member d
Tissue enhanced
Detected in all
lymphoid tissue:
98.1
HIST1H1T
ENSSSCG00000033398
ENSG00000187475
Histone cluster 1 H1 family member t
Tissue enriched
Detected in some
testis:
281.9
HIST1H2AJ
ENSSSCG00000032609
ENSG00000276368
Histone cluster 1 H2A family member j
Tissue enhanced
Detected in many
lymphoid tissue:
104.2
upper respiratory system:
68.0
HIST1H2BA
ENSSSCG00000036045
ENSG00000146047
Histone cluster 1 H2B family member a
Tissue enriched
Detected in some
testis:
359.7
HIST1H2BB
ENSSSCG00000031122
ENSG00000276410
Histone cluster 1 H2B family member b
Tissue enhanced
Detected in all
lymphoid tissue:
131.4
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