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Chromosome
1
2
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8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GNB5
ENSSSCG00000004622
ENSG00000069966
G protein subunit beta 5
Tissue enhanced
Detected in all
brain:
30.7
pineal gland:
42.1
retina:
49.7
GNE
ENSSSCG00000037468
ENSG00000159921
Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase
Tissue enriched
Detected in all
male glands:
122.3
GNG13
ENSSSCG00000008011
ENSG00000127588
G protein subunit gamma 13
Group enriched
Detected in some
brain:
28.2
retina:
20.9
GNG14
ENSSSCG00000013724
ENSG00000283980
G protein subunit gamma 14
Tissue enhanced
Detected in many
epididymis:
16.3
GNG2
ENSSSCG00000028092
ENSG00000186469
G protein subunit gamma 2
Tissue enhanced
Detected in many
brain:
49.6
male glands:
43.2
GNG3
ENSSSCG00000032197
ENSG00000162188
G protein subunit gamma 3
Group enriched
Detected in some
brain:
62.3
pineal gland:
92.8
GNG4
ENSSSCG00000033307
ENSG00000168243
G protein subunit gamma 4
Tissue enriched
Detected in some
brain:
95.3
GNG7
ENSSSCG00000033949
ENSG00000176533
G protein subunit gamma 7
Tissue enriched
Detected in all
brain:
110.7
GNG8
ENSSSCG00000022068
ENSG00000167414
G protein subunit gamma 8
Tissue enhanced
Detected in many
brain:
65.1
GNL3L
ENSSSCG00000012336
ENSG00000130119
G protein nucleolar 3 like
Tissue enriched
Detected in all
lens:
61.7
GNMT
ENSSSCG00000033214
ENSG00000124713
Glycine N-methyltransferase
Tissue enriched
Detected in many
liver:
57.7
GNRH1
ENSSSCG00000009651
ENSG00000147437
Progonadoliberin-1 Gonadoliberin-1 GnRH-associated peptide 1
Tissue enriched
Detected in many
brain:
42.5
GOLGA5
ENSSSCG00000002455
ENSG00000066455
Golgin A5
Tissue enhanced
Detected in all
male glands:
64.2
GOLGA7
ENSSSCG00000020715
ENSG00000147533
Golgin A7
Tissue enriched
Detected in all
brain:
83.6
GOLGA7B
ENSSSCG00000040359
ENSG00000155265
Golgin A7 family member B
Group enriched
Detected in many
brain:
21.4
skin:
13.3
testis:
22.9
GOLM1
ENSSSCG00000010955
ENSG00000135052
Golgi membrane protein 1
Tissue enhanced
Detected in all
small intestine:
76.5
stomach:
88.5
GOLPH3L
ENSSSCG00000038558
ENSG00000143457
Golgi phosphoprotein 3 like
Tissue enhanced
Detected in all
male glands:
91.6
GOLT1A
ENSSSCG00000015279
ENSG00000174567
Golgi transport 1A
Group enriched
Detected in some
large intestine:
6.8
liver:
11.1
small intestine:
15.1
stomach:
4.5
GORAB
ENSSSCG00000006280
ENSG00000120370
Golgin, RAB6 interacting
Tissue enhanced
Detected in all
male glands:
78.3
GOT1
ENSSSCG00000010537
ENSG00000120053
Aspartate aminotransferase, cytoplasmic
Tissue enhanced
Detected in all
heart:
69.7
skeletal muscle:
62.1
GOT1L1
ENSSSCG00000038325
ENSG00000169154
Glutamic-oxaloacetic transaminase 1 like 1
Tissue enriched
Detected in single
testis:
29.0
GP1BA
ENSSSCG00000017908
ENSG00000185245
Glycoprotein Ib platelet alpha subunit
Tissue enhanced
Detected in some
epididymis:
9.6
fallopian tube:
11.7
thyroid gland:
37.5
GP1BB
ENSSSCG00000030732
ENSG00000203618
Platelet glycoprotein Ib beta chain precursor
Tissue enhanced
Detected in many
bone marrow:
14.4
cartilage:
17.4
GP5
ENSSSCG00000031035
ENSG00000178732
Glycoprotein V platelet
Group enriched
Detected in some
choroid plexus:
7.3
dura mater:
2.7
fallopian tube:
6.5
pineal gland:
10.3
thyroid gland:
4.8
GP91-PHOX
ENSSSCG00000012229
ENSG00000165168
Cytochrome b-245 heavy chain precursor
Tissue enhanced
Detected in many
lung:
31.0
lymphoid tissue:
49.0
synovial tissue:
37.3
GPA33
ENSSSCG00000006312
ENSG00000143167
Glycoprotein A33
Group enriched
Detected in some
large intestine:
55.0
small intestine:
20.7
stomach:
25.8
GPAM
ENSSSCG00000010631
ENSG00000119927
Glycerol-3-phosphate acyltransferase, mitochondrial
Tissue enhanced
Detected in all
epididymis:
107.2
liver:
36.7
GPAT3
ENSSSCG00000009233
ENSG00000138678
Glycerol-3-phosphate acyltransferase 3
Tissue enhanced
Detected in many
kidney:
34.6
testis:
27.6
GPBAR1
ENSSSCG00000022483
ENSG00000179921
G protein-coupled bile acid receptor 1
Tissue enriched
Detected in some
gallbladder:
33.1
GPC2
ENSSSCG00000007649
ENSG00000213420
Glypican 2
Tissue enhanced
Detected in many
retina:
12.4
testis:
32.2
GPC3
ENSSSCG00000012680
ENSG00000147257
Glypican 3
Tissue enhanced
Detected in many
cornea:
55.3
liver:
32.8
GPC4
ENSSSCG00000012679
ENSG00000076716
Glypican 4
Tissue enhanced
Detected in many
ovary:
45.2
GPC5
ENSSSCG00000031946
ENSG00000179399
Glypican 5
Tissue enriched
Detected in many
brain:
18.5
GPCPD1
ENSSSCG00000007043
ENSG00000125772
Glycerophosphocholine phosphodiesterase 1
Tissue enhanced
Detected in all
thyroid gland:
57.9
GPD1
ENSSSCG00000000214
ENSG00000167588
Glycerol-3-phosphate dehydrogenase
Tissue enhanced
Detected in all
adipose tissue:
55.9
skeletal muscle:
142.5
GPD1L
ENSSSCG00000021977
ENSG00000152642
Glycerol-3-phosphate dehydrogenase 1 like
Tissue enhanced
Detected in all
male glands:
70.5
GPD2
ENSSSCG00000015872
ENSG00000115159
Glycerol-3-phosphate dehydrogenase 2
Tissue enhanced
Detected in many
brain:
30.8
GPER1
ENSSSCG00000026422
ENSG00000164850
G protein-coupled estrogen receptor 1
Tissue enriched
Detected in many
stomach:
73.0
GPHA2
ENSSSCG00000013015
ENSG00000149735
Glycoprotein hormone alpha 2
Tissue enriched
Detected in some
cornea:
83.9
GPHB5
ENSSSCG00000005116
ENSG00000179600
Glycoprotein hormone beta 5
Group enriched
Detected in some
cornea:
11.3
testis:
16.5
GPI
ENSSSCG00000002873
ENSG00000105220
Glucose-6-phosphate isomerase
Tissue enhanced
Detected in all
lens:
152.2
skeletal muscle:
130.5
GPLD1
ENSSSCG00000001089
ENSG00000112293
Glycosylphosphatidylinositol specific phospholipase D1
Tissue enhanced
Detected in many
liver:
45.1
lung:
26.3
GPM6A
ENSSSCG00000023328
ENSG00000150625
Glycoprotein M6A
Tissue enhanced
Detected in some
brain:
77.2
choroid plexus:
23.5
pineal gland:
19.0
GPNMB
ENSSSCG00000032241
ENSG00000136235
Transmembrane glycoprotein NMB precursor
Tissue enhanced
Detected in many
cervix:
50.5
lung:
48.5
ovary:
64.0
GPR1
ENSSSCG00000016129
ENSG00000183671
G-protein coupled receptor 1
Tissue enriched
Detected in all
synovial tissue:
71.3
GPR101
ENSSSCG00000040432
ENSG00000165370
G protein-coupled receptor 101
Tissue enriched
Detected in single
brain:
22.3
GPR12
ENSSSCG00000009301
ENSG00000132975
G-protein coupled receptor 12
Group enriched
Detected in some
brain:
19.3
retina:
7.2
GPR132
ENSSSCG00000036892
ENSG00000183484
G protein-coupled receptor 132
Tissue enhanced
Detected in many
lymphoid tissue:
17.2
stomach:
13.0
GPR135
ENSSSCG00000032928
ENSG00000181619
G protein-coupled receptor 135
Tissue enriched
Detected in many
testis:
37.1
GPR137B
ENSSSCG00000038853
ENSG00000077585
G protein-coupled receptor 137B
Tissue enhanced
Detected in all
lens:
81.7
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