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Keyword
Chromosome
1
2
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7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GFPT1
ENSSSCG00000008339
ENSG00000198380
Glutamine--fructose-6-phosphate aminotransferase
Tissue enriched
Detected in all
male glands:
198.6
GFPT2
ENSSSCG00000014012
ENSG00000131459
Glutamine-fructose-6-phosphate transaminase 2
Tissue enhanced
Detected in many
cartilage:
41.9
ovary:
57.7
synovial tissue:
75.8
GFRA2
ENSSSCG00000009605
ENSG00000168546
GDNF family receptor alpha 2
Tissue enhanced
Detected in many
brain:
22.6
breast:
12.9
GFRA3
ENSSSCG00000014328
ENSG00000146013
GDNF family receptor alpha 3
Tissue enhanced
Detected in many
adipose tissue:
31.5
brain:
27.3
small intestine:
32.3
vagus nerve:
24.9
GFRA4
ENSSSCG00000021401
ENSG00000125861
GDNF family receptor alpha 4
Tissue enhanced
Detected in many
mesothelial tissue:
31.0
thyroid gland:
47.1
GFRAL
ENSSSCG00000001480
ENSG00000187871
GDNF family receptor alpha like
Tissue enhanced
Detected in some
adrenal gland:
9.5
brain:
3.3
pituitary gland:
3.4
smooth muscle:
3.3
GFY
ENSSSCG00000035723
ENSG00000261949
Golgi associated olfactory signaling regulator
Group enriched
Detected in some
brain:
13.1
retina:
17.2
testis:
15.0
GGACT
ENSSSCG00000009523
ENSG00000134864
Gamma-glutamylamine cyclotransferase
Tissue enhanced
Detected in all
kidney:
38.1
GGH
ENSSSCG00000037637
ENSG00000137563
Gamma-glutamyl hydrolase
Tissue enhanced
Detected in all
liver:
68.0
GGN
ENSSSCG00000002957
ENSG00000179168
Gametogenetin
Tissue enriched
Detected in many
testis:
106.0
GGT6
ENSSSCG00000017883
ENSG00000167741
Gamma-glutamyltransferase 6
Tissue enhanced
Detected in all
cornea:
28.9
GH1
ENSSSCG00000034212
ENSG00000136488,ENSG00000204414,ENSG00000213218,ENSG00000259384
Somatotropin
Tissue enriched
Detected in some
pituitary gland:
738.3
GHITM
ENSSSCG00000010345
ENSG00000165678
Growth hormone-inducible transmembrane protein
Tissue enhanced
Detected in all
pineal gland:
59.4
GHR
ENSSSCG00000016866
ENSG00000112964
Growth hormone receptor precursor
Tissue enhanced
Detected in many
adipose tissue:
57.2
bone marrow:
51.3
liver:
42.1
GHRH
ENSSSCG00000007332
ENSG00000118702
Somatoliberin precursor
Tissue enhanced
Detected in many
brain:
11.2
GHRHR
ENSSSCG00000016673
ENSG00000106128
Growth hormone-releasing hormone receptor
Tissue enriched
Detected in some
pituitary gland:
29.1
GHRL
ENSSSCG00000011568
ENSG00000157017
Appetite-regulating hormone precursor
Tissue enriched
Detected in some
stomach:
70.6
GIF
ENSSSCG00000013117
ENSG00000134812
Gastric intrinsic factor
Tissue enhanced
Detected in all
small intestine:
65.4
stomach:
26.7
GIMAP2
ENSSSCG00000016449
ENSG00000106560
GTPase, IMAP family member 2
Tissue enhanced
Detected in many
large intestine:
5.1
lymphoid tissue:
6.8
small intestine:
5.7
stomach:
7.5
GIMAP7
ENSSSCG00000031897
ENSG00000179144
GTPase, IMAP family member 7
Tissue enhanced
Detected in many
large intestine:
13.1
lymphoid tissue:
26.4
GIMAP8
ENSSSCG00000016452
ENSG00000171115
GTPase, IMAP family member 8
Tissue enhanced
Detected in many
lymphoid tissue:
34.0
GINM1
ENSSSCG00000030067
ENSG00000055211
Glycoprotein integral membrane 1
Tissue enhanced
Detected in all
male glands:
74.3
GINS2
ENSSSCG00000040386
ENSG00000131153
GINS complex subunit 2
Group enriched
Detected in all
lymphoid tissue:
44.7
stomach:
11.6
GIPC1
ENSSSCG00000032842
ENSG00000123159
GIPC PDZ domain containing family member 1
Tissue enhanced
Detected in many
stomach:
33.4
GIPC3
ENSSSCG00000036190
ENSG00000179855
GIPC PDZ domain containing family member 3
Tissue enhanced
Detected in many
lymphoid tissue:
24.7
GIPR
ENSSSCG00000021053
ENSG00000010310
Gastric inhibitory polypeptide receptor
Tissue enhanced
Detected in many
esophagus:
13.4
male glands:
10.1
stomach:
15.6
GIT1
ENSSSCG00000017787
ENSG00000108262
GIT ArfGAP 1
Tissue enhanced
Detected in all
testis:
94.4
GJA1
ENSSSCG00000004241
ENSG00000152661
Gap junction alpha-1 protein
Tissue enhanced
Detected in many
skin:
144.1
GJA10
ENSSSCG00000004330
ENSG00000135355
Gap junction alpha-10 protein
Tissue enhanced
Detected in many
epididymis:
9.3
GJA3
ENSSSCG00000036798
ENSG00000121743
Gap junction protein alpha 3
Tissue enriched
Detected in some
lens:
142.9
GJA4
ENSSSCG00000039983
ENSG00000187513
Gap junction alpha-4 protein
Tissue enhanced
Detected in many
aorta:
31.8
mesothelial tissue:
39.2
GJA8
ENSSSCG00000036239
ENSG00000121634
Gap junction protein alpha 8
Tissue enriched
Detected in single
lens:
215.0
GJA9
ENSSSCG00000003650
ENSG00000131233
Gap junction protein alpha 9
Tissue enhanced
Detected in all
brain:
26.8
GJB1
ENSSSCG00000012394
ENSG00000169562
Gap junction protein beta 1
Tissue enhanced
Detected in many
epididymis:
101.6
liver:
97.0
male glands:
100.9
GJB2
ENSSSCG00000031936
ENSG00000165474
Gap junction protein beta 2
Group enriched
Detected in many
cornea:
90.1
male glands:
37.5
mouth:
41.1
skin:
52.8
GJB3
ENSSSCG00000038677
ENSG00000188910
Gap junction protein beta 3
Tissue enhanced
Detected in many
cornea:
19.2
male glands:
29.8
upper respiratory system:
19.2
GJB4
ENSSSCG00000035068
ENSG00000189433
Gap junction protein beta 4
Tissue enhanced
Detected in some
fallopian tube:
6.8
kidney:
5.7
skin:
13.4
GJB5
ENSSSCG00000003585
ENSG00000189280
Gap junction protein beta 5
Group enriched
Detected in some
cornea:
33.3
mouth:
14.1
skin:
11.4
upper respiratory system:
10.2
GJB6
ENSSSCG00000036474
ENSG00000121742
Gap junction protein beta 6
Tissue enhanced
Detected in many
brain:
24.3
mouth:
21.2
skin:
39.1
GJB7
ENSSSCG00000033562
ENSG00000164411
Gap junction protein beta 7
Tissue enhanced
Detected in many
upper respiratory system:
16.8
GJC1
ENSSSCG00000021306
ENSG00000182963
Gap junction gamma-1 protein
Tissue enhanced
Detected in many
smooth muscle:
33.0
GJC2
ENSSSCG00000013989
ENSG00000198835
Gap junction protein gamma 2
Tissue enriched
Detected in some
brain:
58.1
GJC3
ENSSSCG00000007636
ENSG00000176402
Gap junction protein gamma 3
Tissue enriched
Detected in many
vagus nerve:
83.7
GJD2
ENSSSCG00000036219
ENSG00000159248
Gap junction protein delta 2
Tissue enhanced
Detected in some
brain:
6.5
pineal gland:
16.9
retina:
27.6
GJD3
ENSSSCG00000017474
ENSG00000183153
Gap junction protein delta 3
Tissue enhanced
Detected in many
endometrium:
4.0
mouth:
3.7
GJE1
ENSSSCG00000034307
ENSG00000203733
Gap junction protein epsilon 1
Tissue enriched
Detected in single
lens:
28.5
GK2
ENSSSCG00000009257
ENSG00000196475
Glycerol kinase 2
Tissue enriched
Detected in some
testis:
107.4
GKAP1
ENSSSCG00000026087
ENSG00000165113
G kinase anchoring protein 1
Tissue enhanced
Detected in all
testis:
49.4
GKN1
ENSSSCG00000035529
ENSG00000169605
Gastrokine-1
Tissue enriched
Detected in single
stomach:
603.0
GKN2
ENSSSCG00000038802
ENSG00000183607
Gastrokine-2 precursor
Tissue enriched
Detected in single
stomach:
380.5
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