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Keyword
Chromosome
1
2
3
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6
7
8
9
10
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12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DCUN1D4
ENSSSCG00000008831
ENSG00000109184
Defective in cullin neddylation 1 domain containing 4
Tissue enhanced
Detected in all
brain:
28.6
DCX
ENSSSCG00000012585
ENSG00000077279
Doublecortin
Group enriched
Detected in many
brain:
47.7
cartilage:
36.4
DCXR
ENSSSCG00000039873
ENSG00000169738
Dicarbonyl and L-xylulose reductase
Tissue enhanced
Detected in all
thyroid gland:
93.7
DDAH1
ENSSSCG00000040735
ENSG00000153904
Dimethylarginine dimethylaminohydrolase 1
Tissue enhanced
Detected in many
brain:
48.9
kidney:
54.5
DDB2
ENSSSCG00000013243
ENSG00000134574
Damage specific DNA binding protein 2
Group enriched
Detected in all
cornea:
24.7
lens:
97.1
DDC
ENSSSCG00000022009
ENSG00000132437
Dopa decarboxylase
Group enriched
Detected in some
brain:
23.8
kidney:
83.0
pineal gland:
80.8
DDHD1
ENSSSCG00000005043
ENSG00000100523
DDHD domain containing 1
Tissue enhanced
Detected in all
male glands:
62.1
DDHD2
ENSSSCG00000015818
ENSG00000085788
DDHD domain containing 2
Tissue enhanced
Detected in all
brain:
52.4
DDI1
ENSSSCG00000014995
ENSG00000170967
DNA damage inducible 1 homolog 1
Tissue enriched
Detected in many
testis:
57.0
DDIT4
ENSSSCG00000031888
ENSG00000168209
DNA damage-inducible transcript 4 protein
Tissue enriched
Detected in all
cartilage:
191.5
DDIT4L
ENSSSCG00000025240
ENSG00000145358
DNA damage inducible transcript 4 like
Tissue enhanced
Detected in many
choroid plexus:
36.4
heart:
41.4
mesothelial tissue:
47.4
skeletal muscle:
43.1
DDN
ENSSSCG00000000184
ENSG00000181418
Dendrin
Tissue enriched
Detected in some
brain:
60.6
DDO
ENSSSCG00000004401
ENSG00000203797
D-aspartate oxidase
Tissue enhanced
Detected in many
heart:
22.1
kidney:
22.5
male glands:
19.9
DDR2
ENSSSCG00000006338
ENSG00000162733
Discoidin domain receptor tyrosine kinase 2
Tissue enhanced
Detected in many
cartilage:
103.4
cervix:
79.1
DDT
ENSSSCG00000035836
ENSG00000099977
D-dopachrome decarboxylase
Tissue enhanced
Detected in all
liver:
29.5
DDX1
ENSSSCG00000008619
ENSG00000079785
DEAD-box helicase 1
Tissue enhanced
Detected in all
lens:
103.4
DDX20
ENSSSCG00000006783
ENSG00000064703
DEAD-box helicase 20
Group enriched
Detected in all
lens:
24.8
testis:
76.3
DDX24
ENSSSCG00000002470
ENSG00000089737
DEAD-box helicase 24
Tissue enhanced
Detected in all
testis:
57.2
DDX25
ENSSSCG00000015223
ENSG00000109832
DEAD-box helicase 25
Tissue enriched
Detected in some
testis:
49.3
DDX28
ENSSSCG00000026038
ENSG00000182810
DEAD-box helicase 28
Tissue enhanced
Detected in all
testis:
39.1
DDX39A
ENSSSCG00000013776
ENSG00000123136
DExD-box helicase 39A
Tissue enhanced
Detected in all
testis:
47.1
DDX4
ENSSSCG00000016913
ENSG00000152670
Probable ATP-dependent RNA helicase DDX4
Tissue enriched
Detected in some
testis:
73.8
DDX43
ENSSSCG00000004287
ENSG00000080007
DEAD-box helicase 43
Tissue enriched
Detected in single
testis:
21.5
DDX53
ENSSSCG00000012169
ENSG00000184735
DEAD-box helicase 53
Tissue enriched
Detected in some
testis:
25.4
DDX60
ENSSSCG00000009720
ENSG00000137628
DExD/H-box helicase 60
Tissue enhanced
Detected in many
large intestine:
24.9
small intestine:
27.5
stomach:
25.8
DECR2
ENSSSCG00000007987
ENSG00000242612
2,4-dienoyl-CoA reductase 2
Tissue enhanced
Detected in all
liver:
48.7
male glands:
68.3
DEFB1
ENSSSCG00000027555
Beta-defensin 1
Tissue enriched
Detected in some
lens:
244.7
DEFB1
ENSSSCG00000029990
ENSG00000164825
Beta-defensin 1 precursor
Group enriched
Detected in many
kidney:
122.3
large intestine:
44.2
male glands:
106.3
DEFB110
ENSSSCG00000001743
ENSG00000203970
Beta-defensin 110 precursor
Tissue enriched
Detected in some
epididymis:
52.3
DEFB114
ENSSSCG00000001741
ENSG00000177684
Beta-defensin 114 precursor
Tissue enriched
Detected in some
epididymis:
18.0
DEFB116
ENSSSCG00000007215
ENSG00000215545
Defensin beta 116
Tissue enriched
Detected in some
epididymis:
104.3
DEFB123
ENSSSCG00000007226
ENSG00000180424
Defensin beta 123
Tissue enriched
Detected in some
testis:
76.0
DEFB124
ENSSSCG00000030733
ENSG00000180383
Defensin beta 124
Group enriched
Detected in some
choroid plexus:
21.2
epididymis:
29.7
DEFB125
ENSSSCG00000007217
ENSG00000178591
Beta-defensin 125 precursor
Tissue enriched
Detected in single
epididymis:
135.8
DEFB127
ENSSSCG00000035759
ENSG00000088782
Defensin beta 127
Tissue enriched
Detected in some
epididymis:
106.9
DEFB128
ENSSSCG00000034080
ENSG00000185982
Defensin beta 128
Tissue enriched
Detected in some
epididymis:
252.3
DEFB129
ENSSSCG00000007218
ENSG00000125903
Beta-defensin 129 precursor
Tissue enriched
Detected in single
epididymis:
327.3
DEFB135
ENSSSCG00000039911
ENSG00000205883
Defensin beta 135
Group enriched
Detected in some
epididymis:
100.1
male glands:
40.0
DEGS2
ENSSSCG00000002512
ENSG00000168350
Delta 4-desaturase, sphingolipid 2
Tissue enhanced
Detected in many
gallbladder:
17.3
stomach:
20.1
DENND1C
ENSSSCG00000013546
ENSG00000205744
DENN domain containing 1C
Tissue enhanced
Detected in many
lymphoid tissue:
43.0
stomach:
51.9
DENND2C
ENSSSCG00000006755
ENSG00000175984
DENN domain containing 2C
Tissue enhanced
Detected in many
cornea:
21.5
mouth:
19.6
skin:
41.0
DENND2D
ENSSSCG00000025704
ENSG00000162777
DENN domain containing 2D
Tissue enhanced
Detected in many
lymphoid tissue:
32.2
male glands:
30.5
stomach:
38.9
DEPDC1
ENSSSCG00000033443
ENSG00000024526
DEP domain containing 1
Tissue enhanced
Detected in many
lymphoid tissue:
22.6
testis:
15.9
DEPDC1B
ENSSSCG00000016932
ENSG00000035499
DEP domain containing 1B
Tissue enhanced
Detected in many
lymphoid tissue:
15.0
testis:
12.3
DEPP1
ENSSSCG00000022256
ENSG00000165507
DEPP1, autophagy regulator
Tissue enhanced
Detected in many
aorta:
74.1
cartilage:
67.8
mesothelial tissue:
77.9
DERL3
ENSSSCG00000039626
ENSG00000099958
Derlin 3
Tissue enhanced
Detected in many
male glands:
18.7
DES
ENSSSCG00000020785
ENSG00000175084
Desmin
Tissue enhanced
Detected in many
skeletal muscle:
301.6
smooth muscle:
547.0
urinary bladder:
220.0
DEUP1
ENSSSCG00000014943
ENSG00000165325
Deuterosome assembly protein 1
Tissue enhanced
Detected in many
fallopian tube:
18.7
testis:
51.4
DEXI
ENSSSCG00000037224
ENSG00000182108
Dexi homolog
Tissue enhanced
Detected in all
heart:
103.1
DGAT1
ENSSSCG00000005918
ENSG00000185000
Diacylglycerol O-acyltransferase 1
Tissue enhanced
Detected in all
small intestine:
35.6
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