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Keyword
Chromosome
1
2
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6
7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CSN1S1
ENSSSCG00000009262
ENSG00000126545
Alpha-S1-casein
Tissue enriched
Detected in some
breast:
55.1
CSN2
ENSSSCG00000009261
ENSG00000135222
Beta-casein precursor
Tissue enriched
Detected in some
breast:
27.0
CSN3
ENSSSCG00000009267
ENSG00000171209
Kappa-casein precursor
Tissue enriched
Detected in some
breast:
55.6
CSNK1G2
ENSSSCG00000013445
ENSG00000133275
Casein kinase 1 gamma 2
Tissue enhanced
Detected in all
testis:
86.9
CSPG4
ENSSSCG00000001873
ENSG00000173546
Chondroitin sulfate proteoglycan 4
Tissue enhanced
Detected in many
cartilage:
77.1
penis:
30.9
CSPG5
ENSSSCG00000039224
ENSG00000114646
Chondroitin sulfate proteoglycan 5
Tissue enhanced
Detected in all
brain:
32.3
thyroid gland:
18.5
CSRNP3
ENSSSCG00000015906
ENSG00000178662
Cysteine and serine rich nuclear protein 3
Tissue enhanced
Detected in many
brain:
27.4
retina:
21.7
CSRP1
ENSSSCG00000020976
ENSG00000159176
Cysteine and glycine rich protein 1
Tissue enhanced
Detected in all
smooth muscle:
335.7
CSRP2
ENSSSCG00000000951
ENSG00000175183
Cysteine and glycine rich protein 2
Tissue enhanced
Detected in all
male glands:
75.8
CSRP3
ENSSSCG00000013354
ENSG00000129170
Cysteine and glycine-rich protein 3
Tissue enhanced
Detected in some
heart:
197.1
mouth:
44.4
skeletal muscle:
37.6
synovial tissue:
67.7
CST11
ENSSSCG00000007122
ENSG00000125831
Cystatin 11
Tissue enriched
Detected in some
epididymis:
311.5
CST6
ENSSSCG00000012960
ENSG00000175315
Cystatin E/M
Tissue enhanced
Detected in many
epididymis:
96.1
male glands:
81.3
skin:
99.4
CST7
ENSSSCG00000007131
ENSG00000077984
Cystatin-F precursor
Tissue enhanced
Detected in many
lymphoid tissue:
25.1
stomach:
21.1
CST8
ENSSSCG00000007124
ENSG00000125815
Cystatin 8
Tissue enriched
Detected in some
testis:
60.7
CSTB
ENSSSCG00000027357
ENSG00000160213
Cystatin-B
Tissue enhanced
Detected in all
mouth:
162.4
CSTL1
ENSSSCG00000007121
ENSG00000125823
Cystatin like 1
Group enriched
Detected in some
epididymis:
24.5
testis:
41.2
CT83
ENSSSCG00000021942
ENSG00000204019
Cancer/testis antigen 83
Tissue enhanced
Detected in many
esophagus:
20.4
large intestine:
15.4
salivary gland:
19.7
testis:
12.8
upper respiratory system:
19.4
CTBS
ENSSSCG00000003758
ENSG00000117151
Chitobiase
Tissue enriched
Detected in some
epididymis:
103.9
CTCFL
ENSSSCG00000007505
ENSG00000124092
Transcriptional repressor CTCFL
Tissue enriched
Detected in some
adipose tissue:
27.4
CTGF
ENSSSCG00000004192
ENSG00000118523
Connective tissue growth factor
Tissue enriched
Detected in many
cartilage:
384.2
CTH
ENSSSCG00000003789
ENSG00000116761
Cystathionine gamma-lyase
Group enriched
Detected in many
kidney:
30.9
liver:
88.3
CTHRC1
ENSSSCG00000006051
ENSG00000164932
Collagen triple helix repeat containing 1
Tissue enhanced
Detected in many
lens:
61.5
ovary:
25.0
CTIF
ENSSSCG00000004506
ENSG00000134030
Cap binding complex dependent translation initiation factor
Tissue enhanced
Detected in all
lens:
50.3
CTLA4
ENSSSCG00000016122
ENSG00000163599
Cytotoxic T-lymphocyte protein 4 precursor
Tissue enhanced
Detected in some
large intestine:
8.5
lymphoid tissue:
20.8
stomach:
6.7
CTNNA3
ENSSSCG00000036480
ENSG00000183230
Catenin alpha 3
Tissue enhanced
Detected in many
brain:
44.7
heart:
32.8
vagus nerve:
22.2
CTNNBIP1
ENSSSCG00000036868
ENSG00000178585
Catenin beta interacting protein 1
Tissue enhanced
Detected in all
brain:
29.3
CTNND2
ENSSSCG00000016780
ENSG00000169862
Catenin delta 2
Tissue enhanced
Detected in many
brain:
57.2
pineal gland:
25.0
CTNS
ENSSSCG00000017865
ENSG00000040531
Cystinosin, lysosomal cystine transporter
Tissue enhanced
Detected in all
vagus nerve:
43.2
CTPS1
ENSSSCG00000003973
ENSG00000171793
CTP synthase 1
Tissue enhanced
Detected in all
lymphoid tissue:
27.8
CTRC
ENSSSCG00000027215
ENSG00000162438
Chymotrypsin-C precursor
Tissue enhanced
Detected in some
adipose tissue:
4.4
gallbladder:
9.4
mesothelial tissue:
4.2
CTRL
ENSSSCG00000023849
ENSG00000141086
Chymotrypsin like
Tissue enriched
Detected in single
adipose tissue:
1.2
CTSC
ENSSSCG00000014924
ENSG00000109861
Cathepsin C
Tissue enriched
Detected in many
ovary:
200.8
CTSD
ENSSSCG00000040793
ENSG00000117984,ENSG00000250644
Cathepsin D precursor
Tissue enhanced
Detected in all
synovial tissue:
98.7
CTSH
ENSSSCG00000001770
ENSG00000103811
Pro-cathepsin H Cathepsin H mini chain Cathepsin H Cathepsin H heavy chain Cathepsin H light chain
Tissue enhanced
Detected in all
ovary:
77.2
synovial tissue:
85.6
CTSO
ENSSSCG00000008867
ENSG00000256043
Cathepsin O
Tissue enriched
Detected in all
choroid plexus:
64.0
CTSS
ENSSSCG00000006648
ENSG00000163131
Cathepsin S
Tissue enhanced
Detected in many
lymphoid tissue:
65.7
CTSV
ENSSSCG00000011171
ENSG00000136943
Cathepsin L1 Cathepsin L1 heavy chain Cathepsin L1 light chain
Tissue enhanced
Detected in all
cornea:
126.5
liver:
80.8
CTSW
ENSSSCG00000012970
ENSG00000172543
Cathepsin W
Tissue enriched
Detected in many
lymphoid tissue:
70.7
CTSZ
ENSSSCG00000007522
ENSG00000101160
Cathepsin Z precursor
Tissue enhanced
Detected in all
synovial tissue:
77.8
CTTNBP2
ENSSSCG00000016625
ENSG00000077063
Cortactin binding protein 2
Tissue enhanced
Detected in all
kidney:
75.6
CTXN1
ENSSSCG00000036220
ENSG00000178531
Cortexin 1
Tissue enriched
Detected in some
brain:
90.5
CTXN2
ENSSSCG00000040204
ENSG00000233932
Cortexin 2
Group enriched
Detected in some
brain:
11.1
pituitary gland:
4.7
CTXN3
ENSSSCG00000036570
ENSG00000205279
Cortexin 3
Tissue enhanced
Detected in many
brain:
23.1
dura mater:
22.3
pineal gland:
33.0
CUBN
ENSSSCG00000011030
ENSG00000107611
Cubilin
Tissue enriched
Detected in some
kidney:
124.4
CUEDC2
ENSSSCG00000033359
ENSG00000107874
CUE domain containing 2
Tissue enhanced
Detected in all
vagus nerve:
75.0
CUL3
ENSSSCG00000016234
ENSG00000036257
Cullin 3
Tissue enhanced
Detected in all
lens:
78.4
testis:
58.9
CUL4B
ENSSSCG00000029478
ENSG00000158290
Cullin 4B
Tissue enhanced
Detected in all
pituitary gland:
69.0
CUTA
ENSSSCG00000001512
ENSG00000112514
CutA divalent cation tolerance homolog
Tissue enhanced
Detected in all
lens:
76.5
CUX2
ENSSSCG00000009831
ENSG00000111249
Cut like homeobox 2
Tissue enhanced
Detected in many
adrenal gland:
30.8
brain:
22.8
choroid plexus:
37.1
liver:
32.3
CWH43
ENSSSCG00000008830
ENSG00000109182
Cell wall biogenesis 43 C-terminal homolog
Tissue enhanced
Detected in some
endometrium:
23.7
large intestine:
9.7
mouth:
22.8
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