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Human disease related genes
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UMAP gene cluster
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Chromosome
1
2
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6
7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
C4orf48
ENSSSCG00000008686
ENSG00000243449
Chromosome 4 open reading frame 48
Tissue enhanced
Detected in many
brain:
41.5
lens:
37.4
testis:
57.6
C5
ENSSSCG00000005512
ENSG00000106804
Complement C5a anaphylatoxin precursor
Group enriched
Detected in some
large intestine:
44.2
liver:
68.9
lung:
41.8
small intestine:
35.3
C5AR1
ENSSSCG00000029371
ENSG00000197405
C5a anaphylatoxin chemotactic receptor 1
Tissue enhanced
Detected in all
synovial tissue:
61.0
C5AR2
ENSSSCG00000003113
ENSG00000134830
Complement component 5a receptor 2
Tissue enhanced
Detected in many
cartilage:
39.6
penis:
16.1
C5orf30
ENSSSCG00000038779
ENSG00000181751
Chromosome 5 open reading frame 30
Tissue enhanced
Detected in all
adrenal gland:
25.4
brain:
28.3
C5orf46
ENSSSCG00000034399
ENSG00000178776
Chromosome 5 open reading frame 46
Tissue enriched
Detected in some
skin:
43.9
C5orf47
ENSSSCG00000035512
ENSG00000185056
Chromosome 5 open reading frame 47
Tissue enhanced
Detected in many
brain:
8.3
testis:
6.4
C5orf49
ENSSSCG00000017098
ENSG00000215217
Chromosome 5 open reading frame 49
Tissue enhanced
Detected in many
brain:
21.5
testis:
26.3
upper respiratory system:
33.7
C6
ENSSSCG00000016861
ENSG00000039537
Complement component C6 precursor
Group enriched
Detected in some
large intestine:
34.7
liver:
124.3
C6orf118
ENSSSCG00000004028
ENSG00000112539
Chromosome 6 open reading frame 118
Tissue enhanced
Detected in some
choroid plexus:
20.7
fallopian tube:
37.1
testis:
23.9
upper respiratory system:
17.7
C6orf120
ENSSSCG00000038931
ENSG00000185127
Chromosome 6 open reading frame 120
Tissue enhanced
Detected in all
male glands:
49.6
C6orf132
ENSSSCG00000036801
ENSG00000188112
Chromosome 6 open reading frame 132
Tissue enhanced
Detected in many
cornea:
85.0
mouth:
39.1
stomach:
38.1
C6orf15
ENSSSCG00000001388
ENSG00000204542
Uncharacterized protein C6orf15 homolog precursor
Tissue enriched
Detected in some
mouth:
122.7
C6orf163
ENSSSCG00000004301
ENSG00000203872
Chromosome 6 open reading frame 163
Tissue enhanced
Detected in many
pituitary gland:
18.2
testis:
39.6
C6orf229
ENSSSCG00000001096
ENSG00000260286
Chromosome 6 open reading frame 229
Tissue enriched
Detected in some
testis:
32.3
C6orf58
ENSSSCG00000004212
ENSG00000184530
Chromosome 6 open reading frame 58
Tissue enhanced
Detected in many
esophagus:
34.2
upper respiratory system:
15.1
C7
ENSSSCG00000016859
ENSG00000112936
Complement component C7 precursor
Tissue enhanced
Detected in many
gallbladder:
59.4
heart:
46.0
lymphoid tissue:
47.5
small intestine:
47.9
C7orf31
ENSSSCG00000033313
ENSG00000153790
Chromosome 7 open reading frame 31
Tissue enriched
Detected in some
testis:
65.3
C8A
ENSSSCG00000003835
ENSG00000157131
Complement C8 alpha chain
Tissue enriched
Detected in some
liver:
106.5
C8B
ENSSSCG00000003834
ENSG00000021852
Complement component C8 beta chain precursor
Tissue enriched
Detected in many
liver:
121.4
C8G
ENSSSCG00000005840
ENSG00000176919
Complement component C8 gamma chain precursor
Tissue enriched
Detected in some
liver:
111.8
C8orf34
ENSSSCG00000035887
ENSG00000165084
Chromosome 8 open reading frame 34
Tissue enhanced
Detected in all
epididymis:
54.5
C8orf46
ENSSSCG00000023848
ENSG00000169085
Chromosome 8 open reading frame 46
Group enriched
Detected in some
brain:
59.3
lens:
47.6
C8orf74
ENSSSCG00000009691
ENSG00000171060
Chromosome 8 open reading frame 74
Tissue enriched
Detected in some
testis:
30.1
C8orf82
ENSSSCG00000005895
ENSG00000213563
Chromosome 8 open reading frame 82
Tissue enhanced
Detected in all
testis:
65.2
C8orf88
ENSSSCG00000040562
ENSG00000253250
Chromosome 8 open reading frame 88
Tissue enhanced
Detected in all
lens:
83.5
C8orf89
ENSSSCG00000032228
ENSG00000274443
Chromosome 8 open reading frame 89
Tissue enhanced
Detected in many
brain:
25.8
testis:
28.1
C9
ENSSSCG00000016856
ENSG00000113600
Complement component C9 precursor
Tissue enriched
Detected in some
liver:
150.1
C9orf116
ENSSSCG00000036914
ENSG00000160345
Chromosome 9 open reading frame 116
Tissue enhanced
Detected in all
fallopian tube:
30.6
upper respiratory system:
30.1
C9orf131
ENSSSCG00000005298
ENSG00000174038
Chromosome 9 open reading frame 131
Tissue enriched
Detected in some
testis:
87.9
C9orf135
ENSSSCG00000035668
ENSG00000204711
Chromosome 9 open reading frame 135
Tissue enhanced
Detected in all
testis:
31.0
C9orf152
ENSSSCG00000005452
ENSG00000188959
Chromosome 9 open reading frame 152
Tissue enhanced
Detected in many
male glands:
28.7
C9orf24
ENSSSCG00000010980
ENSG00000164972
Chromosome 9 open reading frame 24
Tissue enhanced
Detected in many
choroid plexus:
17.5
fallopian tube:
20.2
testis:
68.6
C9orf84
ENSSSCG00000005463
ENSG00000165181
Chromosome 9 open reading frame 84
Tissue enriched
Detected in some
testis:
15.0
CA1
ENSSSCG00000040770
ENSG00000133742
Carbonic anhydrase 1
Tissue enriched
Detected in some
large intestine:
179.5
CA10
ENSSSCG00000023169
ENSG00000154975
Carbonic anhydrase 10
Tissue enhanced
Detected in some
brain:
38.6
pineal gland:
34.4
retina:
18.7
CA11
ENSSSCG00000003147
ENSG00000063180
Carbonic anhydrase-related protein 11 precursor
Tissue enhanced
Detected in many
brain:
50.6
cartilage:
33.0
CA12
ENSSSCG00000004565
ENSG00000074410
Carbonic anhydrase 12
Tissue enhanced
Detected in many
kidney:
102.2
large intestine:
56.6
male glands:
36.5
CA14
ENSSSCG00000027875
ENSG00000118298
Carbonic anhydrase 14
Tissue enhanced
Detected in all
brain:
35.7
skeletal muscle:
43.4
CA2
ENSSSCG00000006140
ENSG00000104267
Carbonic anhydrase 2
Tissue enhanced
Detected in many
choroid plexus:
70.9
stomach:
149.1
CA3
ENSSSCG00000006141
ENSG00000164879
Carbonic anhydrase 3
Tissue enriched
Detected in many
skeletal muscle:
324.2
CA4
ENSSSCG00000023186
ENSG00000167434
Carbonic anhydrase 4 precursor
Tissue enriched
Detected in many
gallbladder:
83.4
CA5A
ENSSSCG00000035629
ENSG00000174990
Carbonic anhydrase 5A
Tissue enriched
Detected in some
liver:
65.5
CA5B
ENSSSCG00000012141
ENSG00000169239
Carbonic anhydrase 5B
Tissue enhanced
Detected in all
adipose tissue:
42.3
CA6
ENSSSCG00000003391
ENSG00000131686
Carbonic anhydrase 6 precursor
Tissue enriched
Detected in some
mouth:
123.1
CA7
ENSSSCG00000038785
ENSG00000168748
Carbonic anhydrase 7
Tissue enhanced
Detected in some
brain:
15.2
large intestine:
32.9
pineal gland:
8.1
salivary gland:
9.2
small intestine:
16.3
CA8
ENSSSCG00000006233
ENSG00000178538
Carbonic anhydrase 8
Tissue enhanced
Detected in many
brain:
39.4
male glands:
79.3
CA9
ENSSSCG00000005315
ENSG00000107159
Carbonic anhydrase 9
Tissue enhanced
Detected in many
small intestine:
28.4
stomach:
90.1
testis:
37.7
CAB39
ENSSSCG00000016266
ENSG00000135932
Calcium binding protein 39
Tissue enhanced
Detected in all
lens:
81.7
CAB39L
ENSSSCG00000009397
ENSG00000102547
Calcium binding protein 39 like
Tissue enriched
Detected in all
choroid plexus:
113.8
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