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Human disease related genes
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UMAP gene cluster
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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15028 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CTSF
ENSSSCG00000038918
ENSG00000174080
Cathepsin F
Low tissue specificity
Detected in all
CTSH
ENSSSCG00000001770
ENSG00000103811
Pro-cathepsin H Cathepsin H mini chain Cathepsin H Cathepsin H heavy chain Cathepsin H light chain
Tissue enhanced
Detected in all
ovary:
77.2
synovial tissue:
85.6
CTSO
ENSSSCG00000008867
ENSG00000256043
Cathepsin O
Tissue enriched
Detected in all
choroid plexus:
64.0
CTSS
ENSSSCG00000006648
ENSG00000163131
Cathepsin S
Tissue enhanced
Detected in many
lymphoid tissue:
65.7
CTSV
ENSSSCG00000011171
ENSG00000136943
Cathepsin L1 Cathepsin L1 heavy chain Cathepsin L1 light chain
Tissue enhanced
Detected in all
cornea:
126.5
liver:
80.8
CTSW
ENSSSCG00000012970
ENSG00000172543
Cathepsin W
Tissue enriched
Detected in many
lymphoid tissue:
70.7
CTSZ
ENSSSCG00000007522
ENSG00000101160
Cathepsin Z precursor
Tissue enhanced
Detected in all
synovial tissue:
77.8
CTTN
ENSSSCG00000031769
ENSG00000085733
Cortactin
Low tissue specificity
Detected in all
CTTNBP2
ENSSSCG00000016625
ENSG00000077063
Cortactin binding protein 2
Tissue enhanced
Detected in all
kidney:
75.6
CTTNBP2NL
ENSSSCG00000006781
ENSG00000143079
CTTNBP2 N-terminal like
Low tissue specificity
Detected in all
CTU2
ENSSSCG00000033920
ENSG00000174177
Cytosolic thiouridylase subunit 2
Low tissue specificity
Detected in all
CUEDC1
ENSSSCG00000017624
ENSG00000180891
CUE domain containing 1
Low tissue specificity
Detected in all
CUEDC2
ENSSSCG00000033359
ENSG00000107874
CUE domain containing 2
Tissue enhanced
Detected in all
vagus nerve:
75.0
CUL1
ENSSSCG00000015455
ENSG00000055130
Cullin 1
Low tissue specificity
Detected in all
CUL2
ENSSSCG00000011104
ENSG00000108094
Cullin 2
Low tissue specificity
Detected in all
CUL3
ENSSSCG00000016234
ENSG00000036257
Cullin 3
Tissue enhanced
Detected in all
lens:
78.4
testis:
58.9
CUL4A
ENSSSCG00000009556
ENSG00000139842
Cullin 4A
Low tissue specificity
Detected in all
CUL4B
ENSSSCG00000029478
ENSG00000158290
Cullin 4B
Tissue enhanced
Detected in all
pituitary gland:
69.0
CUL5
ENSSSCG00000029198
ENSG00000166266
Cullin 5
Low tissue specificity
Detected in all
CUL7
ENSSSCG00000001657
ENSG00000044090
Cullin 7
Low tissue specificity
Detected in all
CUL9
ENSSSCG00000030196
ENSG00000112659
Cullin 9
Low tissue specificity
Detected in all
CUTA
ENSSSCG00000001512
ENSG00000112514
CutA divalent cation tolerance homolog
Tissue enhanced
Detected in all
lens:
76.5
CUTC
ENSSSCG00000010542
ENSG00000119929
CutC copper transporter
Low tissue specificity
Detected in all
CUX1
ENSSSCG00000007681
ENSG00000257923
Cut like homeobox 1
Low tissue specificity
Detected in all
CWC15
ENSSSCG00000014961
ENSG00000150316
CWC15 spliceosome associated protein homolog
Low tissue specificity
Detected in all
CWC22
ENSSSCG00000016008
ENSG00000163510
CWC22 spliceosome associated protein homolog
Low tissue specificity
Detected in all
CWC25
ENSSSCG00000021478
ENSG00000273559
Pre-mRNA-splicing factor CWC25 homolog
Low tissue specificity
Detected in all
CWC27
ENSSSCG00000016942
ENSG00000153015
Peptidyl-prolyl cis-trans isomerase CWC27 homolog
Low tissue specificity
Detected in all
CWF19L1
ENSSSCG00000010550
ENSG00000095485
CWF19 like 1, cell cycle control (S. pombe)
Low tissue specificity
Detected in all
CWF19L2
ENSSSCG00000028201
ENSG00000152404
CWF19-like protein 2
Low tissue specificity
Detected in all
CX3CL1
ENSSSCG00000024759
ENSG00000006210
C-X3-C motif chemokine ligand 1
Tissue enhanced
Detected in many
brain:
43.8
CX3CR1
ENSSSCG00000024024
ENSG00000168329
C-X3-C motif chemokine receptor 1
Group enriched
Detected in many
brain:
43.4
pineal gland:
12.1
CXCL10
ENSSSCG00000032474
ENSG00000169245
C-X-C motif chemokine 10 precursor
Low tissue specificity
Detected in all
CXCL12
ENSSSCG00000034973
ENSG00000107562
Stromal cell-derived factor 1 precursor
Tissue enhanced
Detected in many
bone marrow:
71.3
lymphoid tissue:
82.7
CXCL14
ENSSSCG00000014310
ENSG00000145824
C-X-C motif chemokine 14 precursor
Tissue enhanced
Detected in many
skin:
100.3
stomach:
67.6
urinary bladder:
72.5
CXCL2
ENSSSCG00000008959
C-X-C motif chemokine 2 precursor
Tissue enhanced
Detected in all
adrenal gland:
51.3
CXCR3
ENSSSCG00000012402
ENSG00000186810
C-X-C motif chemokine receptor 3
Low tissue specificity
Detected in all
CXCR4
ENSSSCG00000039416
ENSG00000121966
C-X-C chemokine receptor type 4
Tissue enhanced
Detected in all
lymphoid tissue:
33.9
ovary:
25.7
CXCR6
ENSSSCG00000011318
ENSG00000172215
C-X-C chemokine receptor type 6
Tissue enhanced
Detected in all
skeletal muscle:
30.1
CXorf21
ENSSSCG00000012201
ENSG00000120280
Chromosome X open reading frame 21
Tissue enhanced
Detected in many
lymphoid tissue:
20.4
CXorf36
ENSSSCG00000026984
ENSG00000147113
Chromosome X open reading frame 36
Low tissue specificity
Detected in many
CXorf38
ENSSSCG00000012249
ENSG00000185753
Chromosome X open reading frame 38
Low tissue specificity
Detected in all
CXorf56
ENSSSCG00000012622
ENSG00000018610
Chromosome X open reading frame 56
Low tissue specificity
Detected in all
CXorf57
ENSSSCG00000012549
ENSG00000147231
Chromosome X open reading frame 57
Low tissue specificity
Detected in all
CXXC1
ENSSSCG00000004517
ENSG00000154832
CXXC finger protein 1
Low tissue specificity
Detected in all
CXXC5
ENSSSCG00000037898
ENSG00000171604
CXXC finger protein 5
Low tissue specificity
Detected in all
CYB561
ENSSSCG00000017297
ENSG00000008283
Cytochrome b561
Tissue enhanced
Detected in many
adrenal gland:
75.2
ovary:
51.7
CYB561A3
ENSSSCG00000013086
ENSG00000162144
Cytochrome b561 family member A3
Low tissue specificity
Detected in all
CYB561D1
ENSSSCG00000006827
ENSG00000174151
Cytochrome b561 family member D1
Tissue enhanced
Detected in all
male glands:
43.6
CYB5A
ENSSSCG00000004875
ENSG00000166347
Cytochrome b5
Tissue enhanced
Detected in all
ovary:
184.6
testis:
159.0
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