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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15086 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TLR3
ENSSSCG00000015801
ENSG00000164342
Toll-like receptor 3 precursor
Low tissue specificity
Detected in all
TLR4
ENSSSCG00000005503
ENSG00000136869
Toll-like receptor 4 isoform 1 precursor
Tissue enhanced
Detected in many
male glands:
40.1
TLR6
ENSSSCG00000026592
ENSG00000174130
Toll like receptor 6
Low tissue specificity
Detected in many
TLR7
ENSSSCG00000012117
ENSG00000196664
Toll like receptor 7
Low tissue specificity
Detected in many
TLR8
ENSSSCG00000012118
ENSG00000101916
Toll-like receptor 8 precursor
Tissue enriched
Detected in all
lymphoid tissue:
42.9
TM2D1
ENSSSCG00000038861
ENSG00000162604
TM2 domain containing 1
Low tissue specificity
Detected in all
TM2D2
ENSSSCG00000028592
ENSG00000169490
TM2 domain-containing protein 2 precursor
Low tissue specificity
Detected in all
TM2D3
ENSSSCG00000005782
ENSG00000184277
TM2 domain containing 3
Low tissue specificity
Detected in all
TM4SF1
ENSSSCG00000033018
ENSG00000169908
Transmembrane 4 L six family member 1
Low tissue specificity
Detected in many
TM4SF18
ENSSSCG00000011701
ENSG00000163762
Transmembrane 4 L six family member 18
Low tissue specificity
Detected in all
TM4SF4
ENSSSCG00000011703
ENSG00000169903
Transmembrane 4 L six family member 4
Group enriched
Detected in many
gallbladder:
37.6
liver:
42.2
small intestine:
20.8
TM4SF5
ENSSSCG00000031112
ENSG00000142484
Transmembrane 4 L six family member 5
Low tissue specificity
Detected in all
TM6SF1
ENSSSCG00000001800
ENSG00000136404
Transmembrane 6 superfamily member 1
Low tissue specificity
Detected in many
TM7SF2
ENSSSCG00000013004
ENSG00000149809
Transmembrane 7 superfamily member 2
Group enriched
Detected in many
brain:
19.5
liver:
75.8
ovary:
61.1
vagus nerve:
19.7
TM7SF3
ENSSSCG00000000553
ENSG00000064115
Transmembrane 7 superfamily member 3
Low tissue specificity
Detected in all
TM9SF2
ENSSSCG00000031808
ENSG00000125304
Transmembrane 9 superfamily member 2
Tissue enhanced
Detected in all
male glands:
90.5
TM9SF3
ENSSSCG00000010508
ENSG00000077147
Transmembrane 9 superfamily member 3
Tissue enriched
Detected in all
male glands:
158.2
TM9SF4
ENSSSCG00000007246
ENSG00000101337
Transmembrane 9 superfamily member 4
Low tissue specificity
Detected in all
TMA16
ENSSSCG00000008890
ENSG00000198498
Translation machinery associated 16 homolog
Low tissue specificity
Detected in all
TMA7
ENSSSCG00000011351
ENSG00000232112
Translation machinery associated 7 homolog
Low tissue specificity
Detected in all
TMBIM1
ENSSSCG00000016186
ENSG00000135926
Transmembrane BAX inhibitor motif containing 1
Low tissue specificity
Detected in all
TMBIM6
ENSSSCG00000029652
ENSG00000139644
Bax inhibitor 1
Tissue enhanced
Detected in all
male glands:
173.0
TMC4
ENSSSCG00000003266
ENSG00000167608
Transmembrane channel like 4
Tissue enhanced
Detected in many
male glands:
35.2
TMC6
ENSSSCG00000032562
ENSG00000141524
Transmembrane channel like 6
Tissue enhanced
Detected in many
lymphoid tissue:
49.7
stomach:
34.2
TMC7
ENSSSCG00000007866
ENSG00000170537
Transmembrane channel like 7
Tissue enhanced
Detected in all
brain:
53.1
testis:
30.0
TMC8
ENSSSCG00000033592
ENSG00000167895
Transmembrane channel like 8
Tissue enhanced
Detected in many
lymphoid tissue:
39.0
TMCC1
ENSSSCG00000011593
ENSG00000172765
Transmembrane and coiled-coil domains protein 1
Tissue enhanced
Detected in all
lens:
57.3
TMCC2
ENSSSCG00000015287
ENSG00000133069
Transmembrane and coiled-coil domain family 2
Tissue enhanced
Detected in all
lens:
35.9
TMCC3
ENSSSCG00000000906
ENSG00000057704
Transmembrane and coiled-coil domain family 3
Tissue enhanced
Detected in all
stomach:
36.3
TMCO1
ENSSSCG00000037314
ENSG00000143183
Calcium load-activated calcium channel
Low tissue specificity
Detected in all
TMCO3
ENSSSCG00000009563
ENSG00000150403
Transmembrane and coiled-coil domain-containing protein 3 precursor
Low tissue specificity
Detected in all
TMCO4
ENSSSCG00000027489
ENSG00000162542
Transmembrane and coiled-coil domains 4
Low tissue specificity
Detected in many
TMCO6
ENSSSCG00000014370
ENSG00000113119
Transmembrane and coiled-coil domains 6
Low tissue specificity
Detected in all
TMED1
ENSSSCG00000038623
ENSG00000099203
Transmembrane p24 trafficking protein 1
Low tissue specificity
Detected in all
TMED10
ENSSSCG00000035684
ENSG00000170348
Transmembrane p24 trafficking protein 10
Low tissue specificity
Detected in all
TMED3
ENSSSCG00000001773
ENSG00000166557
Transmembrane emp24 domain-containing protein 3 precursor
Tissue enhanced
Detected in all
male glands:
55.0
ovary:
47.0
TMED4
ENSSSCG00000016744
ENSG00000158604
Transmembrane p24 trafficking protein 4
Low tissue specificity
Detected in all
TMED5
ENSSSCG00000040439
ENSG00000117500
Transmembrane emp24 domain-containing protein 5 precursor
Low tissue specificity
Detected in all
TMED7
ENSSSCG00000038156
ENSG00000134970
Transmembrane emp24 domain-containing protein 7 precursor
Low tissue specificity
Detected in all
TMED8
ENSSSCG00000036028
ENSG00000100580
Transmembrane p24 trafficking protein family member 8
Low tissue specificity
Detected in all
TMED9
ENSSSCG00000014036
ENSG00000184840
Transmembrane p24 trafficking protein 9
Low tissue specificity
Detected in all
TMEFF2
ENSSSCG00000016064
ENSG00000144339
Transmembrane protein with EGF like and two follistatin like domains 2
Tissue enriched
Detected in many
brain:
33.4
TMEM100
ENSSSCG00000017607
ENSG00000166292
Transmembrane protein 100
Tissue enhanced
Detected in many
dura mater:
47.2
TMEM101
ENSSSCG00000017371
ENSG00000091947
Transmembrane protein 101
Tissue enhanced
Detected in all
liver:
40.6
TMEM102
ENSSSCG00000028725
ENSG00000181284
Transmembrane protein 102
Low tissue specificity
Detected in all
TMEM104
ENSSSCG00000017230
ENSG00000109066
Transmembrane protein 104
Tissue enhanced
Detected in all
male glands:
34.1
TMEM106A
ENSSSCG00000025856
ENSG00000184988
Transmembrane protein 106A
Low tissue specificity
Detected in all
TMEM106B
ENSSSCG00000032740
ENSG00000106460
Transmembrane protein 106B
Low tissue specificity
Detected in all
TMEM107
ENSSSCG00000027528
ENSG00000179029
Transmembrane protein 107
Low tissue specificity
Detected in all
TMEM109
ENSSSCG00000013110
ENSG00000110108
Transmembrane protein 109
Low tissue specificity
Detected in all
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