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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000021069
Low tissue specificity
Detected in all
na
ENSSSCG00000021141
Tissue enhanced
Detected in some
testis:
2.9
thyroid gland:
2.6
na
ENSSSCG00000021202
Tissue enhanced
Detected in many
lymphoid tissue:
18.6
na
ENSSSCG00000021236
Low tissue specificity
Detected in all
na
ENSSSCG00000021258
ENSG00000164729,ENSG00000177710,ENSG00000236396,ENSG00000259224
Tissue enriched
Detected in many
testis:
57.3
na
ENSSSCG00000021273
Tissue enhanced
Detected in all
cervix:
83.5
na
ENSSSCG00000021305
Low tissue specificity
Detected in many
na
ENSSSCG00000021310
ENSG00000183814
Low tissue specificity
Detected in all
na
ENSSSCG00000021314
Low tissue specificity
Detected in all
na
ENSSSCG00000021315
Tissue enriched
Detected in some
brain:
84.1
na
ENSSSCG00000021322
Low tissue specificity
Detected in all
na
ENSSSCG00000021325
ENSG00000180398
Low tissue specificity
Detected in all
na
ENSSSCG00000021368
Tissue enhanced
Detected in many
brain:
23.6
lens:
33.6
na
ENSSSCG00000021371
ENSG00000145908
Low tissue specificity
Detected in all
na
ENSSSCG00000021375
ENSG00000171004
Group enriched
Detected in some
brain:
9.3
cartilage:
19.1
kidney:
8.2
na
ENSSSCG00000021414
Low tissue specificity
Detected in all
na
ENSSSCG00000021427
ENSG00000132912
Dynactin subunit 4
Low tissue specificity
Detected in all
na
ENSSSCG00000021473
Tissue enriched
Detected in many
testis:
141.6
na
ENSSSCG00000021591
RNA-binding protein 3
Low tissue specificity
Detected in all
na
ENSSSCG00000021623
Low tissue specificity
Detected in all
na
ENSSSCG00000021656
ENSG00000160145
Low tissue specificity
Detected in all
na
ENSSSCG00000021663
ENSG00000273899
Low tissue specificity
Detected in all
na
ENSSSCG00000021675
Low tissue specificity
Detected in many
na
ENSSSCG00000021676
ENSG00000187105
Tissue enriched
Detected in many
testis:
60.1
na
ENSSSCG00000021683
Tissue enhanced
Detected in many
brain:
48.4
na
ENSSSCG00000021708
Low tissue specificity
Detected in all
na
ENSSSCG00000021738
Low tissue specificity
Detected in all
na
ENSSSCG00000021744
ENSG00000189376,ENSG00000259305
Low tissue specificity
Detected in all
na
ENSSSCG00000021757
Low tissue specificity
Detected in all
na
ENSSSCG00000021767
L-threonine 3-dehydrogenase, mitochondrial
Tissue enriched
Detected in many
liver:
66.0
na
ENSSSCG00000021815
ENSG00000134470
Low tissue specificity
Detected in all
na
ENSSSCG00000021851
Low tissue specificity
Detected in many
na
ENSSSCG00000021858
ENSG00000225528
Low tissue specificity
Detected in all
na
ENSSSCG00000021899
Tissue enhanced
Detected in many
cartilage:
59.0
vagus nerve:
24.8
na
ENSSSCG00000021941
ENSG00000166529
Low tissue specificity
Detected in all
na
ENSSSCG00000021975
Tissue enhanced
Detected in all
testis:
52.4
na
ENSSSCG00000021978
Tissue enhanced
Detected in many
lymphoid tissue:
12.7
na
ENSSSCG00000021998
ENSG00000111700,ENSG00000134538,ENSG00000205754,ENSG00000257046
Solute carrier organic anion transporter family member 1B3
Tissue enriched
Detected in many
liver:
116.2
na
ENSSSCG00000022032
ENSG00000153936,ENSG00000267561
Low tissue specificity
Detected in all
na
ENSSSCG00000022058
ENSG00000138085
Low tissue specificity
Detected in all
na
ENSSSCG00000022059
Tissue enhanced
Detected in many
retina:
28.2
na
ENSSSCG00000022120
ENSG00000273274
Tissue enhanced
Detected in many
epididymis:
32.2
na
ENSSSCG00000022130
Tissue enhanced
Detected in all
lymphoid tissue:
45.6
na
ENSSSCG00000022164
ENSG00000160207
Tissue enhanced
Detected in all
testis:
52.4
na
ENSSSCG00000022176
Low tissue specificity
Detected in all
na
ENSSSCG00000022191
Tissue enhanced
Detected in many
smooth muscle:
13.3
na
ENSSSCG00000022194
Low tissue specificity
Detected in all
na
ENSSSCG00000022195
Low tissue specificity
Detected in all
na
ENSSSCG00000022232
Group enriched
Detected in some
testis:
8.8
thyroid gland:
23.8
na
ENSSSCG00000022246
ENSG00000160223,ENSG00000277117
Low tissue specificity
Detected in many
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