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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000013862
ENSG00000105085
Low tissue specificity
Detected in all
na
ENSSSCG00000013874
ENSG00000099330
Low tissue specificity
Detected in all
na
ENSSSCG00000013889
Low tissue specificity
Detected in all
na
ENSSSCG00000013900
ENSG00000105647
Low tissue specificity
Detected in all
na
ENSSSCG00000013902
ENSG00000284797
Tissue enhanced
Detected in some
endometrium:
18.0
fallopian tube:
17.6
large intestine:
20.0
small intestine:
23.5
stomach:
28.3
na
ENSSSCG00000013928
ENSG00000130283,ENSG00000223802
Tissue enhanced
Detected in many
brain:
43.4
vagus nerve:
18.8
na
ENSSSCG00000013976
Low tissue specificity
Detected in all
na
ENSSSCG00000013980
Tissue enhanced
Detected in some
cartilage:
2.9
na
ENSSSCG00000013990
ENSG00000143774
Tissue enhanced
Detected in all
retina:
114.9
na
ENSSSCG00000013992
ADP-ribosylation factor 1
Low tissue specificity
Detected in all
na
ENSSSCG00000014004
ENSG00000141934
Phospholipid phosphatase 2
Tissue enhanced
Detected in many
male glands:
42.1
na
ENSSSCG00000014013
ENSG00000113269
Low tissue specificity
Detected in all
na
ENSSSCG00000014031
ENSG00000197451
Heterogeneous nuclear ribonucleoprotein A/B
Low tissue specificity
Detected in all
na
ENSSSCG00000014037
Tissue enhanced
Detected in some
brain:
33.8
pineal gland:
8.4
pituitary gland:
29.0
na
ENSSSCG00000014060
ENSG00000122203
Putative monooxygenase p33MONOX
Tissue enhanced
Detected in all
male glands:
113.7
na
ENSSSCG00000014071
Transcription factor BTF3
Low tissue specificity
Detected in all
na
ENSSSCG00000014075
Low tissue specificity
Detected in all
na
ENSSSCG00000014079
ENSG00000145700
Low tissue specificity
Detected in all
na
ENSSSCG00000014094
ENSG00000164252
Low tissue specificity
Detected in all
na
ENSSSCG00000014096
Tissue enhanced
Detected in many
large intestine:
19.4
stomach:
21.4
thyroid gland:
19.5
na
ENSSSCG00000014097
ENSG00000113231,ENSG00000284762
Tissue enhanced
Detected in many
brain:
29.5
thyroid gland:
26.6
na
ENSSSCG00000014132
ENSG00000205464
Tissue enhanced
Detected in all
lens:
30.6
na
ENSSSCG00000014161
ENSG00000185261
Tissue enhanced
Detected in all
fallopian tube:
32.3
na
ENSSSCG00000014165
ENSG00000198677
Low tissue specificity
Detected in all
na
ENSSSCG00000014192
Low tissue specificity
Detected in many
na
ENSSSCG00000014198
ENSG00000145777
Tissue enhanced
Detected in many
liver:
11.9
mesothelial tissue:
10.6
na
ENSSSCG00000014203
ENSG00000171444
Tissue enhanced
Detected in all
cartilage:
46.3
na
ENSSSCG00000014250
ENSG00000164241
Low tissue specificity
Detected in all
na
ENSSSCG00000014251
Tissue enhanced
Detected in all
brain:
23.9
ovary:
24.6
na
ENSSSCG00000014264
Tissue enhanced
Detected in all
brain:
49.7
na
ENSSSCG00000014267
ENSG00000158987,ENSG00000273217
Low tissue specificity
Detected in all
na
ENSSSCG00000014280
ENSG00000113522,ENSG00000283782
Tissue enhanced
Detected in all
epididymis:
86.2
na
ENSSSCG00000014284
ENSG00000205089
Tissue enhanced
Detected in many
lens:
14.1
na
ENSSSCG00000014296
Voltage-dependent anion-selective channel protein 1
Tissue enhanced
Detected in all
skeletal muscle:
117.6
na
ENSSSCG00000014314
Tissue enhanced
Detected in many
cartilage:
23.9
na
ENSSSCG00000014343
ENSG00000015479,ENSG00000280987
Low tissue specificity
Detected in all
na
ENSSSCG00000014351
ENSG00000249751
Low tissue specificity
Detected in all
na
ENSSSCG00000014361
ENSG00000120306
Low tissue specificity
Detected in all
na
ENSSSCG00000014368
Low tissue specificity
Detected in all
na
ENSSSCG00000014371
ENSG00000131495
Low tissue specificity
Detected in all
na
ENSSSCG00000014385
ENSG00000243232
Tissue enhanced
Detected in many
brain:
26.3
na
ENSSSCG00000014387
ENSG00000131504
Low tissue specificity
Detected in all
na
ENSSSCG00000014400
Low tissue specificity
Detected in many
na
ENSSSCG00000014414
ENSG00000091009,ENSG00000275740
Low tissue specificity
Detected in all
na
ENSSSCG00000014532
ENSG00000221954
Tissue enhanced
Detected in some
brain:
2.3
cervix:
7.4
thyroid gland:
3.2
na
ENSSSCG00000014540
Ferritin heavy chain
Low tissue specificity
Detected in all
na
ENSSSCG00000014565
Tissue enriched
Detected in many
large intestine:
217.4
na
ENSSSCG00000014569
Low tissue specificity
Detected in all
na
ENSSSCG00000014575
Tissue enhanced
Detected in many
mesothelial tissue:
40.9
na
ENSSSCG00000014605
Tissue enhanced
Detected in many
epididymis:
8.5
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