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UMAP gene cluster
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Keyword
Chromosome
1
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16867 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
INPP5F
ENSSSCG00000010687
ENSG00000198825
Inositol polyphosphate-5-phosphatase F
Tissue enriched
Detected in many
brain:
124.7
INPP5K
ENSSSCG00000030707
ENSG00000132376
Inositol polyphosphate 5-phosphatase K
Low tissue specificity
Detected in all
INPPL1
ENSSSCG00000014811
ENSG00000165458
Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2
Low tissue specificity
Detected in all
INSIG1
ENSSSCG00000016420
ENSG00000186480
Insulin-induced gene 1 protein
Tissue enhanced
Detected in all
liver:
61.1
INSL3
ENSSSCG00000013887
ENSG00000248099
Insulin-like 3 Insulin-like 3 B chain Insulin-like 3 A chain
Tissue enriched
Detected in some
testis:
468.6
INSL6
ENSSSCG00000005214
ENSG00000120210
Insulin like 6
Tissue enriched
Detected in some
testis:
58.1
INSR
ENSSSCG00000013566
ENSG00000171105
Insulin receptor
Low tissue specificity
Detected in all
INTS1
ENSSSCG00000007558
ENSG00000164880
Integrator complex subunit 1
Low tissue specificity
Detected in all
INTS11
ENSSSCG00000003339
ENSG00000127054
Integrator complex subunit 11
Low tissue specificity
Detected in all
INTS12
ENSSSCG00000030617
ENSG00000138785
Integrator complex subunit 12
Low tissue specificity
Detected in all
INTS13
ENSSSCG00000030443
ENSG00000064102
Protein asunder homolog
Tissue enriched
Detected in all
lens:
78.8
INTS14
ENSSSCG00000004936
ENSG00000138614
Integrator complex subunit 14
Low tissue specificity
Detected in all
INTS2
ENSSSCG00000017673
ENSG00000108506
Integrator complex subunit 2
Low tissue specificity
Detected in all
INTS3
ENSSSCG00000006571
ENSG00000143624
Integrator complex subunit 3
Low tissue specificity
Detected in all
INTS5
ENSSSCG00000028275
ENSG00000185085
Integrator complex subunit 5
Low tissue specificity
Detected in all
INTS6
ENSSSCG00000009384
ENSG00000102786
Integrator complex subunit 6
Low tissue specificity
Detected in all
INTS7
ENSSSCG00000015602
ENSG00000143493
Integrator complex subunit 7
Low tissue specificity
Detected in all
INTS8
ENSSSCG00000006096
ENSG00000164941
Integrator complex subunit 8
Low tissue specificity
Detected in all
INTS9
ENSSSCG00000009681
ENSG00000104299
Integrator complex subunit 9
Low tissue specificity
Detected in all
INTU
ENSSSCG00000009079
ENSG00000164066
Inturned planar cell polarity protein
Tissue enhanced
Detected in many
choroid plexus:
20.6
INVS
ENSSSCG00000005388
ENSG00000119509
Inversin
Low tissue specificity
Detected in all
IP6K1
ENSSSCG00000011390
ENSG00000176095
Inositol hexakisphosphate kinase 1
Low tissue specificity
Detected in all
IP6K2
ENSSSCG00000040922
ENSG00000068745
Inositol hexakisphosphate kinase 2
Low tissue specificity
Detected in all
IPMK
ENSSSCG00000040863
ENSG00000151151
Inositol polyphosphate multikinase
Tissue enhanced
Detected in all
testis:
36.3
IPO11
ENSSSCG00000016938
ENSG00000086200
Importin 11
Low tissue specificity
Detected in all
IPO13
ENSSSCG00000029430
ENSG00000117408
Importin 13
Tissue enhanced
Detected in all
skeletal muscle:
62.6
IPO4
ENSSSCG00000002000
ENSG00000196497
Importin 4
Low tissue specificity
Detected in all
IPO5
ENSSSCG00000009509
ENSG00000065150
Importin-5
Tissue enhanced
Detected in all
lens:
96.8
testis:
62.7
IPO7
ENSSSCG00000028886
ENSG00000205339
Importin 7
Low tissue specificity
Detected in all
IPO8
ENSSSCG00000000534
ENSG00000133704
Importin 8
Tissue enriched
Detected in all
lens:
78.3
IPO9
ENSSSCG00000039843
ENSG00000198700
Importin 9
Low tissue specificity
Detected in all
IPP
ENSSSCG00000040796
ENSG00000197429
Intracisternal A particle-promoted polypeptide
Low tissue specificity
Detected in all
IPPK
ENSSSCG00000030204
ENSG00000127080
Inositol-pentakisphosphate 2-kinase
Low tissue specificity
Detected in all
IQANK1
ENSSSCG00000034987
ENSG00000203499
IQ motif and ankyrin repeat containing 1
Tissue enhanced
Detected in many
cartilage:
18.5
epididymis:
14.0
IQCA1
ENSSSCG00000016321
ENSG00000132321
IQ motif containing with AAA domain 1
Tissue enhanced
Detected in some
fallopian tube:
38.0
lung:
15.6
upper respiratory system:
19.5
IQCA1L
ENSSSCG00000025737
ENSG00000278685
IQ motif containing with AAA domain 1 like
Tissue enriched
Detected in some
testis:
19.0
IQCB1
ENSSSCG00000011881
ENSG00000173226
IQ motif containing B1
Low tissue specificity
Detected in all
IQCC
ENSSSCG00000003610
ENSG00000160051
IQ motif containing C
Low tissue specificity
Detected in all
IQCD
ENSSSCG00000009877
ENSG00000166578
IQ motif containing D
Tissue enhanced
Detected in many
fallopian tube:
17.0
testis:
31.3
upper respiratory system:
27.7
IQCE
ENSSSCG00000007568
ENSG00000106012
IQ motif containing E
Tissue enhanced
Detected in all
testis:
75.9
IQCF1
ENSSSCG00000029827
ENSG00000173389
IQ motif containing F1
Tissue enriched
Detected in many
testis:
75.6
IQCF2
ENSSSCG00000023824
ENSG00000184345
IQ motif containing F2
Tissue enriched
Detected in some
testis:
57.9
IQCF5
ENSSSCG00000033277
ENSG00000214681
IQ motif containing F5
Tissue enhanced
Detected in all
testis:
38.7
IQCG
ENSSSCG00000011855
ENSG00000114473
IQ motif containing G
Group enriched
Detected in many
fallopian tube:
26.5
lung:
10.1
testis:
38.2
upper respiratory system:
15.2
IQCH
ENSSSCG00000034963
ENSG00000103599
IQ motif containing H
Tissue enhanced
Detected in many
fallopian tube:
13.0
testis:
34.6
IQCJ
ENSSSCG00000011728
ENSG00000214216
IQ motif containing J
Tissue enriched
Detected in some
brain:
27.4
IQCK
ENSSSCG00000034720
ENSG00000174628
IQ motif containing K
Tissue enhanced
Detected in many
lens:
35.0
testis:
23.6
IQGAP1
ENSSSCG00000001814
ENSG00000140575
IQ motif containing GTPase activating protein 1
Low tissue specificity
Detected in all
IQGAP2
ENSSSCG00000014088
ENSG00000145703
IQ motif containing GTPase activating protein 2
Low tissue specificity
Detected in many
IQGAP3
ENSSSCG00000006475
ENSG00000183856
IQ motif containing GTPase activating protein 3
Tissue enhanced
Detected in many
epididymis:
16.8
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