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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16867 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000011068
ENSG00000107890
Low tissue specificity
Detected in all
na
ENSSSCG00000011077
ENSG00000148450
Low tissue specificity
Detected in all
na
ENSSSCG00000011081
ENSG00000168283,ENSG00000269897
Polycomb complex protein BMI-1
Low tissue specificity
Detected in all
na
ENSSSCG00000011117
Low tissue specificity
Detected in all
na
ENSSSCG00000011121
ENSG00000048740
Low tissue specificity
Detected in all
na
ENSSSCG00000011136
ENSG00000108021
Low tissue specificity
Detected in all
na
ENSSSCG00000011147
Aldo-keto reductase family 1 member C1
Tissue enhanced
Detected in all
adrenal gland:
193.7
kidney:
86.8
liver:
154.5
ovary:
83.5
na
ENSSSCG00000011161
Low tissue specificity
Detected in all
na
ENSSSCG00000011178
ENSG00000196353
Tissue enriched
Detected in some
brain:
44.0
na
ENSSSCG00000011206
Low tissue specificity
Detected in some
na
ENSSSCG00000011239
ENSG00000168016
Low tissue specificity
Detected in all
na
ENSSSCG00000011272
ENSG00000188846
60S ribosomal protein L14
Low tissue specificity
Detected in all
na
ENSSSCG00000011290
Tissue enhanced
Detected in all
brain:
37.1
pineal gland:
44.4
na
ENSSSCG00000011291
ENSG00000244607
Tissue enhanced
Detected in all
fallopian tube:
29.7
na
ENSSSCG00000011324
Tissue enriched
Detected in many
skeletal muscle:
39.7
na
ENSSSCG00000011327
ENSG00000206549,ENSG00000283706
Tissue enriched
Detected in some
testis:
18.2
na
ENSSSCG00000011329
ENSG00000160799
Low tissue specificity
Detected in all
na
ENSSSCG00000011344
Low tissue specificity
Detected in all
na
ENSSSCG00000011347
ENSG00000172113
Low tissue specificity
Detected in all
na
ENSSSCG00000011410
ENSG00000114395
Low tissue specificity
Detected in all
na
ENSSSCG00000011419
Low tissue specificity
Detected in many
na
ENSSSCG00000011434
ENSG00000164088
Low tissue specificity
Detected in all
na
ENSSSCG00000011465
ENSG00000174840
Low tissue specificity
Detected in all
na
ENSSSCG00000011493
ENSG00000163635,ENSG00000285258
Low tissue specificity
Detected in all
na
ENSSSCG00000011506
ENSG00000144744
Low tissue specificity
Detected in all
na
ENSSSCG00000011531
ENSG00000170364
Low tissue specificity
Detected in all
na
ENSSSCG00000011553
ENSG00000214021,ENSG00000250151
Low tissue specificity
Detected in all
na
ENSSSCG00000011556
ENSG00000163701
Tissue enriched
Detected in many
breast:
51.4
na
ENSSSCG00000011565
Low tissue specificity
Detected in all
na
ENSSSCG00000011567
ENSG00000134086
Low tissue specificity
Detected in all
na
ENSSSCG00000011569
ENSG00000157014
Low tissue specificity
Detected in all
na
ENSSSCG00000011601
U6 snRNA-associated Sm-like protein LSm3
Low tissue specificity
Detected in all
na
ENSSSCG00000011627
ENSG00000014257
Low tissue specificity
Detected in all
na
ENSSSCG00000011632
ENSG00000113971
Low tissue specificity
Detected in all
na
ENSSSCG00000011655
Tissue enhanced
Detected in some
breast:
3.0
lymphoid tissue:
9.6
male glands:
2.7
testis:
3.6
na
ENSSSCG00000011676
ENSG00000069849
Tissue enhanced
Detected in all
lens:
73.1
na
ENSSSCG00000011678
ENSG00000114127
Low tissue specificity
Detected in all
na
ENSSSCG00000011688
Tissue enhanced
Detected in many
cervix:
19.5
ductus deferens:
13.6
na
ENSSSCG00000011718
ENSG00000130255
Tissue enhanced
Detected in some
lung:
2.9
stomach:
3.4
testis:
3.1
na
ENSSSCG00000011724
Tissue enhanced
Detected in many
ovary:
7.3
na
ENSSSCG00000011729
ENSG00000151967
Tissue enhanced
Detected in many
brain:
38.1
lens:
46.9
skeletal muscle:
34.4
na
ENSSSCG00000011758
Low tissue specificity
Detected in all
na
ENSSSCG00000011761
ENSG00000197584,ENSG00000275163
Group enriched
Detected in some
epididymis:
35.5
lens:
9.1
na
ENSSSCG00000011764
ENSG00000136521
Tissue enhanced
Detected in all
skeletal muscle:
29.8
na
ENSSSCG00000011768
ENSG00000284862
Low tissue specificity
Detected in all
na
ENSSSCG00000011772
ENSG00000058063
Low tissue specificity
Detected in all
na
ENSSSCG00000011798
ENSG00000090520
DnaJ homolog subfamily B member 11 precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000011803
Eukaryotic initiation factor 4A-II
Low tissue specificity
Detected in all
na
ENSSSCG00000011851
ENSG00000176945
Mucin-20 precursor
Tissue enhanced
Detected in all
kidney:
74.0
male glands:
77.7
na
ENSSSCG00000011852
Tissue enhanced
Detected in some
mouth:
2.5
upper respiratory system:
2.7
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