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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16867 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MOGS
ENSSSCG00000022786
ENSG00000115275
Mannosyl-oligosaccharide glucosidase
Low tissue specificity
Detected in all
MOK
ENSSSCG00000002531
ENSG00000080823
MOK protein kinase
Tissue enhanced
Detected in many
fallopian tube:
25.5
testis:
36.8
MON1A
ENSSSCG00000025791
ENSG00000164077
Vacuolar fusion protein MON1 homolog A
Low tissue specificity
Detected in all
MON1B
ENSSSCG00000002701
ENSG00000103111
MON1 homolog B, secretory trafficking associated
Low tissue specificity
Detected in all
MON2
ENSSSCG00000000458
ENSG00000061987
MON2 homolog, regulator of endosome-to-Golgi trafficking
Low tissue specificity
Detected in all
MORC1
ENSSSCG00000011937
ENSG00000114487
MORC family CW-type zinc finger 1
Tissue enriched
Detected in some
liver:
32.2
MORC2
ENSSSCG00000010016
ENSG00000133422
MORC family CW-type zinc finger 2
Low tissue specificity
Detected in all
MORC3
ENSSSCG00000012055
ENSG00000159256
MORC family CW-type zinc finger 3
Low tissue specificity
Detected in all
MORC4
ENSSSCG00000036091
ENSG00000133131
MORC family CW-type zinc finger 4
Low tissue specificity
Detected in all
MORF4L1
ENSSSCG00000001769
ENSG00000185787
Mortality factor 4 like 1
Low tissue specificity
Detected in all
MORF4L2
ENSSSCG00000012534
ENSG00000123562
Mortality factor 4 like 2
Low tissue specificity
Detected in all
MORN1
ENSSSCG00000028706
ENSG00000116151
MORN repeat containing 1
Tissue enhanced
Detected in many
testis:
21.0
MORN2
ENSSSCG00000008480
ENSG00000188010
MORN repeat containing 2
Tissue enhanced
Detected in all
choroid plexus:
73.2
testis:
66.9
MORN3
ENSSSCG00000009809
ENSG00000139714
MORN repeat-containing protein 3
Tissue enhanced
Detected in many
fallopian tube:
12.9
testis:
20.8
upper respiratory system:
24.9
MORN4
ENSSSCG00000036954
ENSG00000171160
MORN repeat containing 4
Tissue enhanced
Detected in all
brain:
31.0
MORN5
ENSSSCG00000005529
ENSG00000185681
MORN repeat containing 5
Low tissue specificity
Detected in all
MOS
ENSSSCG00000006248
ENSG00000172680
Proto-oncogene serine/threonine-protein kinase mos
Low tissue specificity
Detected in all
MOSMO
ENSSSCG00000031629
ENSG00000185716
Modulator of smoothened
Low tissue specificity
Detected in all
MOSPD2
ENSSSCG00000012131
ENSG00000130150
Motile sperm domain-containing protein 2
Tissue enhanced
Detected in all
lens:
33.6
MOSPD3
ENSSSCG00000023255
ENSG00000106330
Motile sperm domain-containing protein 3
Low tissue specificity
Detected in all
MOV10
ENSSSCG00000006776
ENSG00000155363
Mov10 RISC complex RNA helicase
Low tissue specificity
Detected in many
MOV10L1
ENSSSCG00000000976
ENSG00000073146
Mov10 RISC complex RNA helicase like 1
Tissue enriched
Detected in some
testis:
46.7
MPC1
ENSSSCG00000032916
ENSG00000060762
Mitochondrial pyruvate carrier 1
Low tissue specificity
Detected in all
MPC1L
ENSSSCG00000012248
ENSG00000238205
Mitochondrial pyruvate carrier 1 like
Tissue enriched
Detected in single
testis:
35.4
MPDU1
ENSSSCG00000017955
ENSG00000129255
Mannose-P-dolichol utilization defect 1 protein
Low tissue specificity
Detected in all
MPDZ
ENSSSCG00000005191
ENSG00000107186
Multiple PDZ domain crumbs cell polarity complex component
Low tissue specificity
Detected in all
MPG
ENSSSCG00000007982
ENSG00000103152
N-methylpurine DNA glycosylase
Low tissue specificity
Detected in all
MPHOSPH10
ENSSSCG00000004847
ENSG00000124383
M-phase phosphoprotein 10
Low tissue specificity
Detected in all
MPHOSPH6
ENSSSCG00000034572
ENSG00000135698
M-phase phosphoprotein 6
Low tissue specificity
Detected in all
MPHOSPH8
ENSSSCG00000009570
ENSG00000196199
M-phase phosphoprotein 8
Low tissue specificity
Detected in all
MPHOSPH9
ENSSSCG00000009779
ENSG00000051825
M-phase phosphoprotein 9
Low tissue specificity
Detected in all
MPI
ENSSSCG00000024990
ENSG00000178802
Mannose-6-phosphate isomerase
Low tissue specificity
Detected in all
MPIG6B
ENSSSCG00000034664
ENSG00000204420
Megakaryocyte and platelet inhibitory receptor G6b
Low tissue specificity
Detected in all
MPL
ENSSSCG00000030906
ENSG00000117400
MPL proto-oncogene, thrombopoietin receptor
Tissue enhanced
Detected in many
testis:
23.8
MPND
ENSSSCG00000013507
ENSG00000008382
MPN domain containing
Low tissue specificity
Detected in all
MPP1
ENSSSCG00000012822
ENSG00000130830
Membrane palmitoylated protein 1
Tissue enhanced
Detected in all
small intestine:
55.3
MPP2
ENSSSCG00000017367
ENSG00000108852
Membrane palmitoylated protein 2
Tissue enhanced
Detected in all
brain:
35.9
MPP5
ENSSSCG00000002287
ENSG00000072415
Membrane palmitoylated protein 5
Tissue enhanced
Detected in all
thyroid gland:
80.8
MPP6
ENSSSCG00000016717
ENSG00000105926
Membrane palmitoylated protein 6
Tissue enhanced
Detected in many
vagus nerve:
67.5
MPP7
ENSSSCG00000011070
ENSG00000150054
Membrane palmitoylated protein 7
Low tissue specificity
Detected in many
MPPED1
ENSSSCG00000038685
ENSG00000186732
Metallophosphoesterase domain containing 1
Tissue enhanced
Detected in some
brain:
41.2
male glands:
15.0
stomach:
10.4
MPRIP
ENSSSCG00000036812
ENSG00000133030
Myosin phosphatase Rho interacting protein
Low tissue specificity
Detected in all
MPST
ENSSSCG00000038190
ENSG00000128309
Mercaptopyruvate sulfurtransferase
Low tissue specificity
Detected in all
MPV17L2
ENSSSCG00000013896
ENSG00000254858
MPV17 mitochondrial inner membrane protein like 2
Low tissue specificity
Detected in all
MPZL1
ENSSSCG00000006306
ENSG00000197965
Myelin protein zero like 1
Low tissue specificity
Detected in all
MPZL3
ENSSSCG00000015090
ENSG00000160588
Myelin protein zero like 3
Low tissue specificity
Detected in many
MR1
ENSSSCG00000015540
ENSG00000153029
Major histocompatibility complex, class I-related
Low tissue specificity
Detected in all
MRAS
ENSSSCG00000027443
ENSG00000158186
Muscle RAS oncogene homolog
Tissue enhanced
Detected in many
brain:
51.1
MRC1
ENSSSCG00000011038
ENSG00000260314
Macrophage mannose receptor 1 precursor
Tissue enhanced
Detected in many
liver:
26.3
synovial tissue:
36.3
MRE11
ENSSSCG00000014955
ENSG00000020922
MRE11 homolog, double strand break repair nuclease
Low tissue specificity
Detected in all
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