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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Disease
Keyword
Chromosome
1
2
3
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16867 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MCMDC2
ENSSSCG00000006205
ENSG00000178460
Minichromosome maintenance domain containing 2
Group enriched
Detected in many
choroid plexus:
10.7
testis:
18.4
MCOLN1
ENSSSCG00000013570
ENSG00000090674
Mucolipin 1
Low tissue specificity
Detected in all
MCOLN2
ENSSSCG00000003755
ENSG00000153898
Mucolipin 2
Tissue enhanced
Detected in all
lymphoid tissue:
49.7
MCOLN3
ENSSSCG00000023745
ENSG00000055732
Mucolipin 3
Group enriched
Detected in many
kidney:
28.1
lung:
10.5
thyroid gland:
14.8
MCPH1
ENSSSCG00000015754
ENSG00000147316
Microcephalin 1
Tissue enhanced
Detected in all
lymphoid tissue:
31.7
MCRIP1
ENSSSCG00000039424
ENSG00000225663
MAPK regulated corepressor interacting protein 1
Low tissue specificity
Detected in all
MCRIP2
ENSSSCG00000007995
ENSG00000172366
MAPK regulated corepressor interacting protein 2
Tissue enhanced
Detected in all
adrenal gland:
83.0
heart:
78.4
male glands:
94.2
skeletal muscle:
67.4
MCRS1
ENSSSCG00000000202
ENSG00000187778
Microspherule protein 1
Low tissue specificity
Detected in all
MCTP2
ENSSSCG00000002257
ENSG00000140563
Multiple C2 and transmembrane domain containing 2
Tissue enhanced
Detected in many
retina:
37.2
MCTS1
ENSSSCG00000030833
ENSG00000232119
MCTS1, re-initiation and release factor
Low tissue specificity
Detected in many
MCU
ENSSSCG00000010290
ENSG00000156026
Mitochondrial calcium uniporter
Low tissue specificity
Detected in all
MCUB
ENSSSCG00000009141
ENSG00000005059
Mitochondrial calcium uniporter dominant negative beta subunit
Tissue enhanced
Detected in all
lens:
76.8
MCUR1
ENSSSCG00000001057
ENSG00000050393
Mitochondrial calcium uniporter regulator 1
Low tissue specificity
Detected in all
MDC1
ENSSSCG00000001362
ENSG00000137337
Mediator of DNA damage checkpoint protein 1
Low tissue specificity
Detected in all
MDFI
ENSSSCG00000001620
ENSG00000112559
MyoD family inhibitor
Tissue enhanced
Detected in all
adrenal gland:
30.7
cartilage:
27.1
MDFIC
ENSSSCG00000021885
ENSG00000135272
MyoD family inhibitor domain containing
Low tissue specificity
Detected in many
MDFIC2
ENSSSCG00000040266
ENSG00000242120
MyoD family inhibitor domain containing 2
Tissue enhanced
Detected in all
smooth muscle:
32.8
MDH1
ENSSSCG00000025751
ENSG00000014641
Malate dehydrogenase, cytoplasmic
Tissue enhanced
Detected in all
brain:
69.9
heart:
71.5
pineal gland:
93.7
MDH1B
ENSSSCG00000016133
ENSG00000138400
Malate dehydrogenase 1B
Low tissue specificity
Detected in all
MDH2
ENSSSCG00000025486
ENSG00000146701
Malate dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
heart:
114.6
skeletal muscle:
108.7
MDK
ENSSSCG00000013260
ENSG00000110492
Midkine precursor
Low tissue specificity
Detected in all
MDM2
ENSSSCG00000000488
ENSG00000135679
E3 ubiquitin-protein ligase Mdm2
Low tissue specificity
Detected in all
MDM4
ENSSSCG00000015284
ENSG00000198625
MDM4, p53 regulator
Low tissue specificity
Detected in all
MDN1
ENSSSCG00000004328
ENSG00000112159
Midasin AAA ATPase 1
Low tissue specificity
Detected in all
ME1
ENSSSCG00000004454
ENSG00000065833
Malic enzyme 1
Tissue enhanced
Detected in many
adipose tissue:
36.4
aorta:
33.0
cartilage:
36.0
ME2
ENSSSCG00000004522
ENSG00000082212
Malic enzyme 2
Low tissue specificity
Detected in all
ME3
ENSSSCG00000014919
ENSG00000151376
NADP-dependent malic enzyme, mitochondrial
Low tissue specificity
Detected in all
MEAF6
ENSSSCG00000034611
ENSG00000163875
Chromatin modification-related protein MEAF6
Low tissue specificity
Detected in all
MECP2
ENSSSCG00000034742
ENSG00000169057
Methyl-CpG binding protein 2
Low tissue specificity
Detected in all
MED1
ENSSSCG00000017505
ENSG00000125686
Mediator complex subunit 1
Low tissue specificity
Detected in all
MED10
ENSSSCG00000017106
ENSG00000133398
Mediator complex subunit 10
Low tissue specificity
Detected in all
MED11
ENSSSCG00000017919
ENSG00000161920
Mediator of RNA polymerase II transcription subunit 11
Low tissue specificity
Detected in all
MED12
ENSSSCG00000012396
ENSG00000184634
Mediator complex subunit 12
Low tissue specificity
Detected in all
MED12L
ENSSSCG00000011714
ENSG00000144893
Mediator complex subunit 12 like
Tissue enhanced
Detected in all
choroid plexus:
50.0
lens:
52.3
MED13
ENSSSCG00000017672
ENSG00000108510
Mediator complex subunit 13
Low tissue specificity
Detected in all
MED13L
ENSSSCG00000009864
ENSG00000123066
Mediator complex subunit 13 like
Low tissue specificity
Detected in all
MED14
ENSSSCG00000012250
ENSG00000180182
Mediator complex subunit 14
Low tissue specificity
Detected in all
MED15
ENSSSCG00000010107
ENSG00000099917
Mediator complex subunit 15
Low tissue specificity
Detected in all
MED16
ENSSSCG00000013416
ENSG00000175221
Mediator complex subunit 16
Low tissue specificity
Detected in all
MED19
ENSSSCG00000013177
ENSG00000156603
Mediator complex subunit 19
Low tissue specificity
Detected in all
MED20
ENSSSCG00000038520
ENSG00000124641
Mediator of RNA polymerase II transcription subunit 20
Low tissue specificity
Detected in all
MED21
ENSSSCG00000000552
ENSG00000152944
Mediator of RNA polymerase II transcription subunit 21
Low tissue specificity
Detected in all
MED22
ENSSSCG00000031941
ENSG00000148297
Mediator complex subunit 22
Low tissue specificity
Detected in all
MED23
ENSSSCG00000004196
ENSG00000112282
Mediator complex subunit 23
Low tissue specificity
Detected in all
MED24
ENSSSCG00000029102
ENSG00000008838
Mediator complex subunit 24
Low tissue specificity
Detected in all
MED25
ENSSSCG00000003197
ENSG00000104973
Mediator complex subunit 25
Low tissue specificity
Detected in all
MED27
ENSSSCG00000005720
ENSG00000160563
Mediator of RNA polymerase II transcription subunit 27
Low tissue specificity
Detected in all
MED28
ENSSSCG00000029989
ENSG00000118579
Mediator of RNA polymerase II transcription subunit 28
Low tissue specificity
Detected in all
MED30
ENSSSCG00000033577
ENSG00000164758
Mediator complex subunit 30
Low tissue specificity
Detected in all
MED31
ENSSSCG00000027100
ENSG00000108590
Mediator complex subunit 31
Low tissue specificity
Detected in all
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