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UMAP gene cluster
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Chromosome
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16867 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LSM2
ENSSSCG00000039021
ENSG00000204392
U6 snRNA-associated Sm-like protein LSm2
Low tissue specificity
Detected in all
LSM4
ENSSSCG00000034314
ENSG00000130520
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
Low tissue specificity
Detected in all
LSM6
ENSSSCG00000035973
ENSG00000164167
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
Low tissue specificity
Detected in all
LSM7
ENSSSCG00000013463
ENSG00000130332
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
Low tissue specificity
Detected in all
LSM8
ENSSSCG00000021652
ENSG00000128534
LSM8 homolog, U6 small nuclear RNA associated
Low tissue specificity
Detected in all
LSMEM1
ENSSSCG00000040053
ENSG00000181016
Leucine rich single-pass membrane protein 1
Low tissue specificity
Detected in all
LSMEM2
ENSSSCG00000011401
ENSG00000179564
Leucine rich single-pass membrane protein 2
Tissue enhanced
Detected in many
heart:
22.2
vagus nerve:
20.8
LSR
ENSSSCG00000002884
ENSG00000105699
Lipolysis stimulated lipoprotein receptor
Low tissue specificity
Detected in all
LSS
ENSSSCG00000021418
ENSG00000160285
Lanosterol synthase
Tissue enhanced
Detected in all
liver:
70.7
LTA
ENSSSCG00000001403
ENSG00000226979
Lymphotoxin-alpha
Tissue enhanced
Detected in many
lymphoid tissue:
29.5
upper respiratory system:
8.7
LTA4H
ENSSSCG00000000891
ENSG00000111144
Leukotriene A-4 hydrolase
Low tissue specificity
Detected in all
LTBP1
ENSSSCG00000008510
ENSG00000049323
Latent transforming growth factor beta binding protein 1
Tissue enhanced
Detected in many
cartilage:
91.5
ovary:
106.5
LTBP3
ENSSSCG00000012985
ENSG00000168056
Latent transforming growth factor beta binding protein 3
Tissue enhanced
Detected in all
cartilage:
96.6
LTBP4
ENSSSCG00000033760
ENSG00000090006
Latent transforming growth factor beta binding protein 4
Low tissue specificity
Detected in many
LTBR
ENSSSCG00000000706
ENSG00000111321
Tumor necrosis factor receptor superfamily member 3 precursor
Low tissue specificity
Detected in all
LTN1
ENSSSCG00000030528
ENSG00000198862
Listerin E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
LUC7L
ENSSSCG00000007979
ENSG00000007392
LUC7 like
Low tissue specificity
Detected in all
LUC7L2
ENSSSCG00000016509
ENSG00000146963
LUC7 like 2, pre-mRNA splicing factor
Low tissue specificity
Detected in all
LUM
ENSSSCG00000000916
ENSG00000139329
Lumican precursor
Tissue enhanced
Detected in many
cornea:
60.7
dura mater:
57.2
synovial tissue:
57.4
LURAP1L
ENSSSCG00000036360
ENSG00000153714
Leucine rich adaptor protein 1 like
Low tissue specificity
Detected in many
LUZP1
ENSSSCG00000003532
ENSG00000169641
Leucine zipper protein 1
Low tissue specificity
Detected in all
LXN
ENSSSCG00000020984
ENSG00000079257
Latexin
Low tissue specificity
Detected in all
LY6G5C
ENSSSCG00000001416
ENSG00000204428
Lymphocyte antigen 6 family member G5C
Low tissue specificity
Detected in many
LY6G6C
ENSSSCG00000036566
ENSG00000204421
Lymphocyte antigen 6 family member G6C
Group enriched
Detected in some
cornea:
9.4
mouth:
31.3
skin:
15.0
testis:
33.3
LY86
ENSSSCG00000032355
ENSG00000112799
Lymphocyte antigen 86 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
46.7
LY9
ENSSSCG00000006375
ENSG00000122224
Lymphocyte antigen 9
Tissue enriched
Detected in many
lymphoid tissue:
54.7
LY96
ENSSSCG00000006175
ENSG00000154589
Lymphocyte antigen 96
Low tissue specificity
Detected in all
LYAR
ENSSSCG00000008729
ENSG00000145220
Ly1 antibody reactive
Tissue enriched
Detected in all
testis:
65.7
LYG1
ENSSSCG00000037136
ENSG00000144214
Lysozyme g1
Tissue enhanced
Detected in some
brain:
1.8
ductus deferens:
3.3
testis:
1.3
LYG2
ENSSSCG00000034542
ENSG00000185674
Lysozyme g2
Tissue enriched
Detected in many
skin:
20.9
LYNX1
ENSSSCG00000031724
ENSG00000180155
Ly6/neurotoxin 1
Tissue enhanced
Detected in many
brain:
43.6
heart:
43.9
LYPD4
ENSSSCG00000003044
ENSG00000273111
Ly6/PLAUR domain-containing protein 4 precursor
Tissue enriched
Detected in some
testis:
84.3
LYPD5
ENSSSCG00000003073
ENSG00000159871
LY6/PLAUR domain containing 5
Low tissue specificity
Detected in all
LYPD6B
ENSSSCG00000015677
ENSG00000150556
LY6/PLAUR domain containing 6B
Tissue enhanced
Detected in many
male glands:
19.8
pituitary gland:
30.7
skin:
18.5
LYPLA2
ENSSSCG00000023191
ENSG00000011009
Lysophospholipase II
Low tissue specificity
Detected in all
LYPLAL1
ENSSSCG00000010817
ENSG00000143353
Lysophospholipase like 1
Tissue enriched
Detected in all
lens:
66.8
LYRM1
ENSSSCG00000007853
ENSG00000102897
LYR motif containing 1
Low tissue specificity
Detected in all
LYRM2
ENSSSCG00000004324
ENSG00000083099
LYR motif containing 2
Low tissue specificity
Detected in all
LYRM4
ENSSSCG00000031269
ENSG00000214113
LYR motif containing 4
Low tissue specificity
Detected in all
LYRM7
ENSSSCG00000033213
ENSG00000186687
LYR motif containing 7
Low tissue specificity
Detected in all
LYSMD1
ENSSSCG00000020965
ENSG00000163155
LysM and putative peptidoglycan-binding domain-containing protein 1
Low tissue specificity
Detected in all
LYSMD3
ENSSSCG00000024193
ENSG00000176018
LysM domain containing 3
Low tissue specificity
Detected in all
LYSMD4
ENSSSCG00000030487
ENSG00000183060
LysM domain containing 4
Low tissue specificity
Detected in all
LYST
ENSSSCG00000010151
ENSG00000143669
Lysosomal trafficking regulator
Low tissue specificity
Detected in all
LYVE1
ENSSSCG00000029886
ENSG00000133800
Lymphatic vessel endothelial hyaluronan receptor 1
Low tissue specificity
Detected in all
LYZL4
ENSSSCG00000011279
ENSG00000157093
Lysozyme like 4
Tissue enriched
Detected in single
testis:
46.3
LYZL6
ENSSSCG00000017321
ENSG00000275722
Lysozyme like 6
Tissue enriched
Detected in single
testis:
48.5
LZIC
ENSSSCG00000033257
ENSG00000162441
Leucine zipper and CTNNBIP1 domain containing
Low tissue specificity
Detected in all
LZTFL1
ENSSSCG00000011314
ENSG00000163818
Leucine zipper transcription factor like 1
Tissue enhanced
Detected in all
testis:
108.0
LZTR1
ENSSSCG00000010097
ENSG00000099949
Leucine zipper like transcription regulator 1
Low tissue specificity
Detected in all
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