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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GIT1
ENSSSCG00000017787
ENSG00000108262
GIT ArfGAP 1
Tissue enhanced
Detected in all
testis:
94.4
GIT2
ENSSSCG00000009925
ENSG00000139436
GIT ArfGAP 2
Low tissue specificity
Detected in all
GJA1
ENSSSCG00000004241
ENSG00000152661
Gap junction alpha-1 protein
Tissue enhanced
Detected in many
skin:
144.1
GJA10
ENSSSCG00000004330
ENSG00000135355
Gap junction alpha-10 protein
Tissue enhanced
Detected in many
epididymis:
9.3
GJA4
ENSSSCG00000039983
ENSG00000187513
Gap junction alpha-4 protein
Tissue enhanced
Detected in many
aorta:
31.8
mesothelial tissue:
39.2
GJA5
ENSSSCG00000006696
ENSG00000265107
Gap junction protein alpha 5
Low tissue specificity
Detected in many
GJA9
ENSSSCG00000003650
ENSG00000131233
Gap junction protein alpha 9
Tissue enhanced
Detected in all
brain:
26.8
GJB1
ENSSSCG00000012394
ENSG00000169562
Gap junction protein beta 1
Tissue enhanced
Detected in many
epididymis:
101.6
liver:
97.0
male glands:
100.9
GJB6
ENSSSCG00000036474
ENSG00000121742
Gap junction protein beta 6
Tissue enhanced
Detected in many
brain:
24.3
mouth:
21.2
skin:
39.1
GJC1
ENSSSCG00000021306
ENSG00000182963
Gap junction gamma-1 protein
Tissue enhanced
Detected in many
smooth muscle:
33.0
GJC3
ENSSSCG00000007636
ENSG00000176402
Gap junction protein gamma 3
Tissue enriched
Detected in many
vagus nerve:
83.7
GK5
ENSSSCG00000011677
ENSG00000175066
Glycerol kinase 5 (putative)
Low tissue specificity
Detected in all
GKAP1
ENSSSCG00000026087
ENSG00000165113
G kinase anchoring protein 1
Tissue enhanced
Detected in all
testis:
49.4
GLA
ENSSSCG00000038423
ENSG00000102393
Alpha-galactosidase A
Tissue enhanced
Detected in all
ovary:
35.6
GLB1
ENSSSCG00000024119
ENSG00000170266
Galactosidase beta 1
Tissue enhanced
Detected in all
male glands:
56.2
GLB1L
ENSSSCG00000016213
ENSG00000163521
Galactosidase beta 1 like
Tissue enhanced
Detected in all
kidney:
50.3
testis:
56.4
GLCCI1
ENSSSCG00000015345
ENSG00000106415
Glucocorticoid induced 1
Tissue enhanced
Detected in all
lymphoid tissue:
47.4
GLCE
ENSSSCG00000026078
ENSG00000138604
Glucuronic acid epimerase
Low tissue specificity
Detected in all
GLDN
ENSSSCG00000004632
ENSG00000186417
Gliomedin
Tissue enhanced
Detected in many
ovary:
40.9
vagus nerve:
53.8
GLE1
ENSSSCG00000005652
ENSG00000119392
GLE1, RNA export mediator
Low tissue specificity
Detected in all
GLG1
ENSSSCG00000030420
ENSG00000090863
Golgi glycoprotein 1
Low tissue specificity
Detected in all
GLI1
ENSSSCG00000000443
ENSG00000111087
Zinc finger protein GLI1
Tissue enhanced
Detected in many
cartilage:
19.5
vagus nerve:
16.9
GLI2
ENSSSCG00000015733
ENSG00000074047
Zinc finger protein GLI2
Tissue enhanced
Detected in many
cartilage:
43.7
GLI3
ENSSSCG00000016763
ENSG00000106571
GLI family zinc finger 3
Tissue enhanced
Detected in many
cartilage:
79.1
GLI4
ENSSSCG00000039881
ENSG00000250571
GLI family zinc finger 4
Low tissue specificity
Detected in all
GLIPR1
ENSSSCG00000000519
ENSG00000139278
GLI pathogenesis related 1
Tissue enhanced
Detected in all
large intestine:
29.0
GLIPR1L1
ENSSSCG00000022055
ENSG00000173401
GLIPR1 like 1
Tissue enriched
Detected in all
testis:
53.0
GLIPR2
ENSSSCG00000031236
ENSG00000122694
GLI pathogenesis related 2
Low tissue specificity
Detected in all
GLIS1
ENSSSCG00000003846
ENSG00000174332
GLIS family zinc finger 1
Tissue enhanced
Detected in many
cartilage:
36.5
ductus deferens:
36.4
kidney:
25.7
GLIS2
ENSSSCG00000023653
ENSG00000126603
GLIS family zinc finger 2
Low tissue specificity
Detected in all
GLIS3
ENSSSCG00000005224
ENSG00000107249
GLIS family zinc finger 3
Tissue enhanced
Detected in many
male glands:
75.0
GLMN
ENSSSCG00000006904
ENSG00000174842
Glomulin, FKBP associated protein
Tissue enhanced
Detected in all
pineal gland:
32.9
retina:
37.6
GLMP
ENSSSCG00000006488
ENSG00000198715
Glycosylated lysosomal membrane protein
Low tissue specificity
Detected in all
GLOD5
ENSSSCG00000031477
ENSG00000171433
Glyoxalase domain containing 5
Low tissue specificity
Detected in all
GLRA4
ENSSSCG00000012535
ENSG00000188828
Glycine receptor alpha 4
Low tissue specificity
Detected in all
GLRB
ENSSSCG00000032722
ENSG00000109738
Glycine receptor subunit beta precursor
Tissue enhanced
Detected in all
brain:
18.7
GLRX2
ENSSSCG00000031991
ENSG00000023572
Glutaredoxin 2
Low tissue specificity
Detected in all
GLRX3
ENSSSCG00000010759
ENSG00000108010
Glutaredoxin-3
Tissue enhanced
Detected in all
lens:
86.6
GLRX5
ENSSSCG00000002496
ENSG00000182512
Glutaredoxin 5
Low tissue specificity
Detected in all
GLS
ENSSSCG00000016056
ENSG00000115419
Glutaminase
Low tissue specificity
Detected in all
GLS2
ENSSSCG00000000401
ENSG00000135423
Glutaminase 2
Tissue enriched
Detected in many
liver:
63.9
GLT6D1
ENSSSCG00000031107
ENSG00000204007
Glycosyltransferase 6 domain containing 1
Low tissue specificity
Detected in all
GLT8D1
ENSSSCG00000011448
ENSG00000016864
Glycosyltransferase 8 domain containing 1
Low tissue specificity
Detected in all
GLT8D2
ENSSSCG00000000848
ENSG00000120820
Glycosyltransferase 8 domain containing 2
Tissue enhanced
Detected in many
cartilage:
32.1
GLTP
ENSSSCG00000039012
ENSG00000139433
Glycolipid transfer protein
Low tissue specificity
Detected in all
GLTPD2
ENSSSCG00000017914
ENSG00000182327
Glycolipid transfer protein domain containing 2
Low tissue specificity
Detected in all
GLUD1
ENSSSCG00000010368
Glutamate dehydrogenase 1, mitochondrial
Tissue enhanced
Detected in all
brain:
80.8
liver:
52.4
GLUL
ENSSSCG00000015545
ENSG00000135821
Glutamine synthetase
Tissue enhanced
Detected in all
brain:
161.1
GLYCTK
ENSSSCG00000011432
ENSG00000168237
Glycerate kinase
Group enriched
Detected in many
kidney:
25.0
liver:
55.7
GLYR1
ENSSSCG00000007931
ENSG00000140632
Glyoxylate reductase 1 homolog
Low tissue specificity
Detected in all
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