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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FBXW8
ENSSSCG00000009860
ENSG00000174989
F-box and WD repeat domain containing 8
Low tissue specificity
Detected in all
FBXW9
ENSSSCG00000013725
ENSG00000132004
F-box and WD repeat domain containing 9
Low tissue specificity
Detected in all
FCAR
ENSSSCG00000003284
ENSG00000186431
Fc fragment of IgA receptor
Low tissue specificity
Detected in all
FCER1A
ENSSSCG00000006413
ENSG00000179639
Fc fragment of IgE receptor Ia
Low tissue specificity
Detected in all
FCER1G
ENSSSCG00000006357
ENSG00000158869
High affinity immunoglobulin epsilon receptor subunit gamma
Tissue enhanced
Detected in many
bone marrow:
72.1
lymphoid tissue:
92.3
synovial tissue:
75.2
FCF1
ENSSSCG00000039202
ENSG00000119616
FCF1, rRNA-processing protein
Low tissue specificity
Detected in all
FCGBP
ENSSSCG00000027515
ENSG00000275395
Fc fragment of IgG binding protein
Tissue enriched
Detected in some
male glands:
762.8
FCGR1A
ENSSSCG00000006678
ENSG00000150337
High affinity immunoglobulin gamma Fc receptor I precursor
Low tissue specificity
Detected in all
FCGRT
ENSSSCG00000003187
ENSG00000104870
IgG receptor FcRn large subunit p51 precursor
Low tissue specificity
Detected in all
FCHO1
ENSSSCG00000013885
ENSG00000130475
FCH domain only 1
Tissue enhanced
Detected in many
brain:
26.2
lymphoid tissue:
27.3
FCHO2
ENSSSCG00000022661
ENSG00000157107
FCH domain only 2
Low tissue specificity
Detected in all
FCHSD1
ENSSSCG00000014390
ENSG00000197948
FCH and double SH3 domains 1
Low tissue specificity
Detected in many
FCHSD2
ENSSSCG00000014820
ENSG00000137478
FCH and double SH3 domains 2
Low tissue specificity
Detected in all
FCN2
ENSSSCG00000023333
Ficolin-2 precursor
Tissue enhanced
Detected in many
adipose tissue:
64.7
large intestine:
57.6
small intestine:
75.4
stomach:
99.9
vagus nerve:
43.5
FCRL1
ENSSSCG00000006456
ENSG00000163534
Fc receptor like 1
Tissue enhanced
Detected in all
lymphoid tissue:
41.2
FCRL3
ENSSSCG00000006457
ENSG00000160856
Fc receptor like 3
Tissue enriched
Detected in many
lymphoid tissue:
38.2
FCRLA
ENSSSCG00000030246
ENSG00000132185
Fc receptor like A
Tissue enhanced
Detected in some
lymphoid tissue:
34.8
small intestine:
12.0
upper respiratory system:
19.8
FCRLB
ENSSSCG00000006348
ENSG00000162746
Fc receptor like B
Tissue enhanced
Detected in some
lymphoid tissue:
6.3
FDFT1
ENSSSCG00000026044
ENSG00000079459
Squalene synthase
Low tissue specificity
Detected in all
FDPS
ENSSSCG00000006512
ENSG00000160752
Farnesyl pyrophosphate synthase precursor
Low tissue specificity
Detected in all
FDX1
ENSSSCG00000035945
ENSG00000137714
Adrenodoxin, mitochondrial
Tissue enhanced
Detected in all
adrenal gland:
115.0
ovary:
31.2
testis:
27.6
FDXACB1
ENSSSCG00000021871
ENSG00000255561
Ferredoxin-fold anticodon binding domain containing 1
Low tissue specificity
Detected in all
FDXR
ENSSSCG00000017227
ENSG00000161513
NADPH:adrenodoxin oxidoreductase, mitochondrial
Group enriched
Detected in many
adrenal gland:
79.0
ovary:
21.4
testis:
19.8
FECH
ENSSSCG00000004541
ENSG00000066926
Ferrochelatase, mitochondrial
Tissue enhanced
Detected in all
choroid plexus:
75.1
FEM1A
ENSSSCG00000037153
ENSG00000141965
Fem-1 homolog A
Tissue enhanced
Detected in all
skeletal muscle:
127.7
FEM1B
ENSSSCG00000022419
ENSG00000169018
Fem-1 homolog B
Low tissue specificity
Detected in all
FEM1C
ENSSSCG00000014217
ENSG00000145780
Fem-1 homolog C
Low tissue specificity
Detected in all
FEN1
ENSSSCG00000028696
ENSG00000168496
Flap structure-specific endonuclease 1
Low tissue specificity
Detected in all
FERMT2
ENSSSCG00000005041
ENSG00000073712
Fermitin family member 2
Tissue enhanced
Detected in all
smooth muscle:
90.3
FERMT3
ENSSSCG00000013041
ENSG00000149781
Fermitin family member 3
Tissue enhanced
Detected in all
lymphoid tissue:
54.0
FES
ENSSSCG00000001818
ENSG00000182511
FES proto-oncogene, tyrosine kinase
Tissue enhanced
Detected in many
lymphoid tissue:
55.7
FEZ2
ENSSSCG00000008503
ENSG00000171055
Fasciculation and elongation protein zeta 2
Low tissue specificity
Detected in all
FFAR2
ENSSSCG00000032438
ENSG00000126262
Free fatty acid receptor 2
Low tissue specificity
Detected in all
FGD1
ENSSSCG00000012335
ENSG00000102302
FYVE, RhoGEF and PH domain containing 1
Low tissue specificity
Detected in all
FGD2
ENSSSCG00000001572
ENSG00000146192
FYVE, RhoGEF and PH domain containing 2
Tissue enhanced
Detected in many
lymphoid tissue:
64.4
FGD3
ENSSSCG00000028185
ENSG00000127084
FYVE, RhoGEF and PH domain containing 3
Tissue enhanced
Detected in many
lymphoid tissue:
40.5
small intestine:
21.3
stomach:
32.6
FGD4
ENSSSCG00000000530
ENSG00000139132
FYVE, RhoGEF and PH domain containing 4
Low tissue specificity
Detected in all
FGD5
ENSSSCG00000011598
ENSG00000154783
FYVE, RhoGEF and PH domain containing 5
Low tissue specificity
Detected in many
FGD6
ENSSSCG00000000901
ENSG00000180263
FYVE, RhoGEF and PH domain containing 6
Low tissue specificity
Detected in all
FGF1
ENSSSCG00000024954
ENSG00000113578
Fibroblast growth factor 1
Tissue enhanced
Detected in many
brain:
37.4
heart:
22.8
lens:
33.4
pineal gland:
28.4
FGF10
ENSSSCG00000016878
ENSG00000070193
Fibroblast growth factor 10
Tissue enhanced
Detected in many
adipose tissue:
19.1
cornea:
40.9
FGF11
ENSSSCG00000034757
ENSG00000161958
Fibroblast growth factor 11
Low tissue specificity
Detected in all
FGF13
ENSSSCG00000022331
ENSG00000129682
Fibroblast growth factor 13
Tissue enhanced
Detected in many
brain:
47.1
FGF16
ENSSSCG00000022833
ENSG00000196468
Fibroblast growth factor 16
Tissue enhanced
Detected in some
adipose tissue:
4.7
heart:
7.4
mesothelial tissue:
4.2
FGF18
ENSSSCG00000016997
ENSG00000156427
Fibroblast growth factor 18
Tissue enhanced
Detected in many
cartilage:
43.5
FGF2
ENSSSCG00000036213
ENSG00000138685
Fibroblast growth factor 2
Tissue enhanced
Detected in all
choroid plexus:
38.9
FGF22
ENSSSCG00000039236
ENSG00000070388
Fibroblast growth factor 22
Low tissue specificity
Detected in all
FGF23
ENSSSCG00000039492
ENSG00000118972
Fibroblast growth factor 23
Low tissue specificity
Detected in all
FGF6
ENSSSCG00000032662
ENSG00000111241
Fibroblast growth factor 6
Tissue enhanced
Detected in many
skeletal muscle:
11.6
FGF9
ENSSSCG00000009278
ENSG00000102678
Fibroblast growth factor 9
Tissue enhanced
Detected in many
adrenal gland:
30.5
kidney:
21.7
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