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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AGO2
ENSSSCG00000005935
ENSG00000123908
Protein argonaute-2
Low tissue specificity
Detected in all
AGO3
ENSSSCG00000003630
ENSG00000126070
Protein argonaute-3
Low tissue specificity
Detected in all
AGPAT1
ENSSSCG00000001435
ENSG00000204310
1-acyl-sn-glycerol-3-phosphate acyltransferase alpha
Tissue enhanced
Detected in all
adipose tissue:
142.4
AGPAT2
ENSSSCG00000040845
ENSG00000169692
1-acyl-sn-glycerol-3-phosphate acyltransferase beta precursor
Low tissue specificity
Detected in many
AGPAT3
ENSSSCG00000038081
ENSG00000160216
1-acyl-sn-glycerol-3-phosphate acyltransferase gamma
Tissue enhanced
Detected in all
retina:
64.7
AGPAT4
ENSSSCG00000004033
ENSG00000026652
1-acyl-sn-glycerol-3-phosphate acyltransferase delta
Tissue enriched
Detected in many
brain:
52.4
AGPAT5
ENSSSCG00000015755
ENSG00000155189
1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon
Low tissue specificity
Detected in all
AGPS
ENSSSCG00000023983
ENSG00000018510
Alkylglycerone phosphate synthase
Low tissue specificity
Detected in all
AGRN
ENSSSCG00000022204
ENSG00000188157
Agrin
Low tissue specificity
Detected in all
AGT
ENSSSCG00000010184
ENSG00000135744
Angiotensinogen
Tissue enhanced
Detected in many
adipose tissue:
99.8
brain:
96.0
liver:
70.3
AGTPBP1
ENSSSCG00000010957
ENSG00000135049
ATP/GTP binding protein 1
Tissue enhanced
Detected in all
brain:
24.7
AGTR1
ENSSSCG00000011695
ENSG00000144891
Type-1 angiotensin II receptor
Tissue enhanced
Detected in many
adipose tissue:
29.1
AGTRAP
ENSSSCG00000022401
ENSG00000177674
Angiotensin II receptor associated protein
Low tissue specificity
Detected in all
AGXT2
ENSSSCG00000016829
ENSG00000113492
Alanine--glyoxylate aminotransferase 2, mitochondrial
Group enriched
Detected in all
kidney:
36.1
liver:
106.3
AHCTF1
ENSSSCG00000010863
ENSG00000153207
AT-hook containing transcription factor 1
Low tissue specificity
Detected in all
AHCY
ENSSSCG00000007278
Adenosylhomocysteinase
Low tissue specificity
Detected in all
AHCYL1
ENSSSCG00000006816
ENSG00000168710
Adenosylhomocysteinase 2
Low tissue specificity
Detected in all
AHCYL2
ENSSSCG00000016568
ENSG00000158467
Adenosylhomocysteinase like 2
Tissue enhanced
Detected in all
choroid plexus:
93.8
large intestine:
59.1
AHDC1
ENSSSCG00000003579
ENSG00000126705
AT-hook DNA binding motif containing 1
Low tissue specificity
Detected in all
AHI1
ENSSSCG00000004166
ENSG00000135541
Abelson helper integration site 1
Tissue enhanced
Detected in all
brain:
51.3
AHNAK
ENSSSCG00000033010
ENSG00000124942
AHNAK nucleoprotein
Low tissue specificity
Detected in all
AHR
ENSSSCG00000030484
ENSG00000106546,ENSG00000283321
Aryl hydrocarbon receptor
Low tissue specificity
Detected in all
AHSA1
ENSSSCG00000002406
ENSG00000100591
Activator of HSP90 ATPase activity 1
Low tissue specificity
Detected in all
AHSP
ENSSSCG00000037878
ENSG00000169877
Alpha hemoglobin stabilizing protein
Tissue enhanced
Detected in all
dura mater:
33.0
AICDA
ENSSSCG00000000667
ENSG00000111732
Activation induced cytidine deaminase
Tissue enhanced
Detected in many
lymphoid tissue:
22.1
upper respiratory system:
18.7
AIDA
ENSSSCG00000010835
ENSG00000186063
Axin interactor, dorsalization associated
Low tissue specificity
Detected in all
AIF1
ENSSSCG00000032341
ENSG00000204472
Allograft inflammatory factor 1
Low tissue specificity
Detected in all
AIF1L
ENSSSCG00000034178
ENSG00000126878
Allograft inflammatory factor 1 like
Tissue enhanced
Detected in many
brain:
93.1
cartilage:
55.4
vagus nerve:
51.7
AIFM1
ENSSSCG00000012657
ENSG00000156709
Apoptosis-inducing factor 1, mitochondrial
Low tissue specificity
Detected in all
AIFM2
ENSSSCG00000010258
ENSG00000042286
Apoptosis inducing factor, mitochondria associated 2
Tissue enhanced
Detected in all
adipose tissue:
40.1
testis:
38.3
AIG1
ENSSSCG00000004136
ENSG00000146416
Androgen induced 1
Low tissue specificity
Detected in all
AIMP1
ENSSSCG00000024168
ENSG00000164022
Aminoacyl tRNA synthase complex-interacting multifunctional protein 1
Low tissue specificity
Detected in all
AIMP2
ENSSSCG00000024245
ENSG00000106305
Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 isoform 1
Low tissue specificity
Detected in all
AIP
ENSSSCG00000012904
ENSG00000110711
Aryl hydrocarbon receptor interacting protein
Low tissue specificity
Detected in all
AJUBA
ENSSSCG00000029201
ENSG00000129474
Ajuba LIM protein
Low tissue specificity
Detected in all
AK1
ENSSSCG00000005627
ENSG00000106992
Adenylate kinase isoenzyme 1
Tissue enriched
Detected in many
skeletal muscle:
215.4
AK6
ENSSSCG00000037053
ENSG00000085231
Adenylate kinase 6
Low tissue specificity
Detected in all
AK8
ENSSSCG00000039188
ENSG00000165695
Adenylate kinase 8
Tissue enhanced
Detected in all
fallopian tube:
28.4
testis:
33.9
upper respiratory system:
32.2
AKAIN1
ENSSSCG00000038232
ENSG00000231824
A-kinase anchor inhibitor 1
Tissue enhanced
Detected in all
adrenal gland:
38.5
pituitary gland:
39.9
AKAP1
ENSSSCG00000034994
ENSG00000121057
A-kinase anchor protein 1, mitochondrial
Tissue enhanced
Detected in all
heart:
54.5
testis:
78.8
AKAP10
ENSSSCG00000024030
ENSG00000108599
A-kinase anchor protein 10, mitochondrial
Low tissue specificity
Detected in all
AKAP12
ENSSSCG00000031733
ENSG00000131016
A-kinase anchoring protein 12
Low tissue specificity
Detected in many
AKAP17A
ENSSSCG00000032986
ENSG00000197976
A-kinase anchoring protein 17A
Tissue enhanced
Detected in all
stomach:
69.3
AKAP3
ENSSSCG00000000720
ENSG00000111254
A-kinase anchor protein 3
Tissue enriched
Detected in many
testis:
78.4
AKAP5
ENSSSCG00000002268
ENSG00000179841
A-kinase anchoring protein 5
Tissue enriched
Detected in many
brain:
44.5
AKAP6
ENSSSCG00000024517
ENSG00000151320
A-kinase anchoring protein 6
Tissue enhanced
Detected in many
brain:
31.0
heart:
30.2
skeletal muscle:
30.0
AKAP7
ENSSSCG00000036790
ENSG00000118507
A-kinase anchoring protein 7
Low tissue specificity
Detected in all
AKAP8
ENSSSCG00000013837
ENSG00000105127
A-kinase anchoring protein 8
Low tissue specificity
Detected in all
AKAP8L
ENSSSCG00000013838
ENSG00000011243
A-kinase anchoring protein 8 like
Low tissue specificity
Detected in all
AKAP9
ENSSSCG00000015310
ENSG00000127914
A-kinase anchor protein 9
Low tissue specificity
Detected in all
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