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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ELAC2
ENSSSCG00000028465
ENSG00000006744
Zinc phosphodiesterase ELAC protein 2
Low tissue specificity
Detected in all
ELANE
ENSSSCG00000029130
ENSG00000197561
Elastase, neutrophil expressed
Tissue enriched
Detected in many
bone marrow:
70.9
ELAVL1
ENSSSCG00000013592
ENSG00000066044
ELAV-like protein 1
Low tissue specificity
Detected in all
ELF1
ENSSSCG00000009440
ENSG00000120690
E74 like ETS transcription factor 1
Low tissue specificity
Detected in all
ELF2
ENSSSCG00000029920
ENSG00000109381
E74 like ETS transcription factor 2
Low tissue specificity
Detected in all
ELF4
ENSSSCG00000012656
ENSG00000102034
E74 like ETS transcription factor 4
Tissue enhanced
Detected in many
stomach:
41.7
ELF5
ENSSSCG00000013301
ENSG00000135374
ETS-related transcription factor Elf-5
Tissue enriched
Detected in all
male glands:
114.9
ELFN1
ENSSSCG00000030485
ENSG00000225968
Extracellular leucine rich repeat and fibronectin type III domain containing 1
Group enriched
Detected in some
brain:
7.6
retina:
22.1
testis:
10.9
ELK1
ENSSSCG00000012279
ENSG00000126767
ELK1, ETS transcription factor
Low tissue specificity
Detected in all
ELK3
ENSSSCG00000023803
ENSG00000111145
ELK3, ETS transcription factor
Low tissue specificity
Detected in many
ELK4
ENSSSCG00000025182
ENSG00000158711
ELK4, ETS transcription factor
Low tissue specificity
Detected in all
ELL
ENSSSCG00000040181
ENSG00000105656
Elongation factor for RNA polymerase II
Low tissue specificity
Detected in all
ELL2
ENSSSCG00000014168
ENSG00000118985
Elongation factor for RNA polymerase II 2
Tissue enhanced
Detected in all
lens:
121.3
ELMO1
ENSSSCG00000016656
ENSG00000155849
Engulfment and cell motility 1
Low tissue specificity
Detected in all
ELMO2
ENSSSCG00000023306
ENSG00000062598
Engulfment and cell motility 2
Low tissue specificity
Detected in all
ELMO3
ENSSSCG00000002786
ENSG00000102890
Engulfment and cell motility 3
Tissue enhanced
Detected in many
male glands:
48.7
ELMOD2
ENSSSCG00000009055
ENSG00000179387
ELMO domain containing 2
Tissue enhanced
Detected in all
choroid plexus:
23.6
pineal gland:
20.3
ELMOD3
ENSSSCG00000008238
ENSG00000115459
ELMO domain containing 3
Tissue enhanced
Detected in all
adipose tissue:
80.9
ELMSAN1
ENSSSCG00000002350
ENSG00000156030
ELM2 and Myb/SANT domain containing 1
Low tissue specificity
Detected in all
ELN
ENSSSCG00000025858
ENSG00000049540
Elastin precursor
Tissue enriched
Detected in many
cartilage:
455.5
ELOA
ENSSSCG00000025440
ENSG00000011007
Elongin A
Low tissue specificity
Detected in all
ELOC
ENSSSCG00000006176
ENSG00000154582
Elongin C
Low tissue specificity
Detected in all
ELOF1
ENSSSCG00000013613
ENSG00000130165
Elongation factor 1 homolog
Tissue enriched
Detected in all
testis:
130.2
ELOVL1
ENSSSCG00000035238
ENSG00000066322
Elongation of very long chain fatty acids protein 1
Tissue enhanced
Detected in all
brain:
60.5
ELOVL4
ENSSSCG00000028080
ENSG00000118402
ELOVL fatty acid elongase 4
Tissue enhanced
Detected in all
pineal gland:
35.1
retina:
59.9
ELOVL5
ENSSSCG00000024149
ENSG00000012660
ELOVL fatty acid elongase 5
Tissue enhanced
Detected in all
adipose tissue:
86.4
ELOVL6
ENSSSCG00000036236
ENSG00000170522
ELOVL fatty acid elongase 6
Tissue enhanced
Detected in many
adipose tissue:
71.4
aorta:
68.9
ELOVL7
ENSSSCG00000035012
ENSG00000164181
ELOVL fatty acid elongase 7
Tissue enhanced
Detected in all
brain:
45.3
male glands:
53.5
ELP2
ENSSSCG00000020898
ENSG00000134759
Elongator acetyltransferase complex subunit 2
Low tissue specificity
Detected in all
ELP3
ENSSSCG00000009674
ENSG00000134014
Elongator acetyltransferase complex subunit 3
Low tissue specificity
Detected in all
ELP4
ENSSSCG00000013321
ENSG00000109911
Elongator acetyltransferase complex subunit 4
Low tissue specificity
Detected in all
ELP5
ENSSSCG00000027514
ENSG00000170291
Elongator acetyltransferase complex subunit 5
Low tissue specificity
Detected in all
ELP6
ENSSSCG00000011336
ENSG00000163832
Elongator acetyltransferase complex subunit 6
Low tissue specificity
Detected in all
ELSPBP1
ENSSSCG00000003125
ENSG00000169393
Epididymal sperm-binding protein 1 precursor
Tissue enriched
Detected in some
epididymis:
206.4
EMC1
ENSSSCG00000003489
ENSG00000127463
ER membrane protein complex subunit 1
Low tissue specificity
Detected in all
EMC10
ENSSSCG00000039372
ENSG00000161671
ER membrane protein complex subunit 10
Low tissue specificity
Detected in all
EMC2
ENSSSCG00000006032
ENSG00000104412
ER membrane protein complex subunit 2
Low tissue specificity
Detected in all
EMC3
ENSSSCG00000011562
ENSG00000125037
ER membrane protein complex subunit 3
Low tissue specificity
Detected in all
EMC4
ENSSSCG00000039550
ENSG00000128463
ER membrane protein complex subunit 4
Low tissue specificity
Detected in all
EMC6
ENSSSCG00000017867
ENSG00000127774
ER membrane protein complex subunit 6
Low tissue specificity
Detected in all
EMC7
ENSSSCG00000027051
ENSG00000134153
ER membrane protein complex subunit 7 precursor
Low tissue specificity
Detected in all
EMC8
ENSSSCG00000029403
ENSG00000131148
ER membrane protein complex subunit 8
Low tissue specificity
Detected in all
EMC9
ENSSSCG00000002005
ENSG00000100908
ER membrane protein complex subunit 9
Tissue enhanced
Detected in all
skeletal muscle:
34.4
EMCN
ENSSSCG00000038080
ENSG00000164035
Endomucin
Low tissue specificity
Detected in many
EMD
ENSSSCG00000037777
ENSG00000102119
Emerin
Low tissue specificity
Detected in all
EME2
ENSSSCG00000021467
ENSG00000197774
Essential meiotic structure-specific endonuclease subunit 2
Tissue enhanced
Detected in many
cartilage:
24.1
EMG1
ENSSSCG00000026812
ENSG00000126749
Ribosomal RNA small subunit methyltransferase NEP1
Low tissue specificity
Detected in all
EMID1
ENSSSCG00000009975
ENSG00000186998
EMI domain containing 1
Tissue enhanced
Detected in many
vagus nerve:
31.0
EMILIN1
ENSSSCG00000008557
ENSG00000138080
Elastin microfibril interfacer 1
Tissue enhanced
Detected in many
lymphoid tissue:
49.3
smooth muscle:
48.5
EMILIN2
ENSSSCG00000003694
ENSG00000132205
Elastin microfibril interfacer 2
Tissue enhanced
Detected in many
ovary:
49.3
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