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Human disease related genes
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UMAP gene cluster
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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DDX19B
ENSSSCG00000002722
ENSG00000157349
DEAD-box helicase 19B
Low tissue specificity
Detected in all
DDX20
ENSSSCG00000006783
ENSG00000064703
DEAD-box helicase 20
Group enriched
Detected in all
lens:
24.8
testis:
76.3
DDX21
ENSSSCG00000010247
ENSG00000165732
DExD-box helicase 21
Low tissue specificity
Detected in all
DDX23
ENSSSCG00000000176
ENSG00000174243
DEAD-box helicase 23
Low tissue specificity
Detected in all
DDX24
ENSSSCG00000002470
ENSG00000089737
DEAD-box helicase 24
Tissue enhanced
Detected in all
testis:
57.2
DDX27
ENSSSCG00000022915
ENSG00000124228
DEAD-box helicase 27
Low tissue specificity
Detected in all
DDX28
ENSSSCG00000026038
ENSG00000182810
DEAD-box helicase 28
Tissue enhanced
Detected in all
testis:
39.1
DDX31
ENSSSCG00000005729
ENSG00000125485
DEAD-box helicase 31
Low tissue specificity
Detected in all
DDX39A
ENSSSCG00000013776
ENSG00000123136
DExD-box helicase 39A
Tissue enhanced
Detected in all
testis:
47.1
DDX39B
ENSSSCG00000001400
ENSG00000198563
Spliceosome RNA helicase DDX39B
Low tissue specificity
Detected in all
DDX3X
ENSSSCG00000012252
ENSG00000215301
ATP-dependent RNA helicase DDX3X
Low tissue specificity
Detected in all
DDX41
ENSSSCG00000032642
ENSG00000183258
DEAD-box helicase 41
Low tissue specificity
Detected in all
DDX42
ENSSSCG00000017289
ENSG00000198231
DEAD-box helicase 42
Low tissue specificity
Detected in all
DDX46
ENSSSCG00000026644
ENSG00000145833
Probable ATP-dependent RNA helicase DDX46
Low tissue specificity
Detected in all
DDX47
ENSSSCG00000033149
ENSG00000213782
DEAD-box helicase 47
Low tissue specificity
Detected in all
DDX49
ENSSSCG00000025329
ENSG00000105671
DEAD-box helicase 49
Low tissue specificity
Detected in all
DDX5
ENSSSCG00000032092
ENSG00000108654
DEAD-box helicase 5
Low tissue specificity
Detected in all
DDX50
ENSSSCG00000010246
ENSG00000107625
DExD-box helicase 50
Low tissue specificity
Detected in all
DDX51
ENSSSCG00000028735
ENSG00000185163
DEAD-box helicase 51
Low tissue specificity
Detected in all
DDX52
ENSSSCG00000021275
ENSG00000278053
DExD-box helicase 52
Low tissue specificity
Detected in all
DDX54
ENSSSCG00000009876
ENSG00000123064
DEAD-box helicase 54
Low tissue specificity
Detected in all
DDX55
ENSSSCG00000009771
ENSG00000111364
DEAD-box helicase 55
Low tissue specificity
Detected in all
DDX56
ENSSSCG00000016745
ENSG00000136271
Probable ATP-dependent RNA helicase DDX56
Low tissue specificity
Detected in all
DDX58
ENSSSCG00000030408
ENSG00000107201
Probable ATP-dependent RNA helicase DDX58
Low tissue specificity
Detected in all
DDX59
ENSSSCG00000024444
ENSG00000118197
DEAD-box helicase 59
Low tissue specificity
Detected in all
DDX6
ENSSSCG00000015097
ENSG00000110367
DEAD-box helicase 6
Low tissue specificity
Detected in all
DDX60
ENSSSCG00000009720
ENSG00000137628
DExD/H-box helicase 60
Tissue enhanced
Detected in many
large intestine:
24.9
small intestine:
27.5
stomach:
25.8
DEAF1
ENSSSCG00000012850
ENSG00000177030
DEAF1, transcription factor
Low tissue specificity
Detected in all
DECR1
ENSSSCG00000006126
ENSG00000104325
2,4-dienoyl-CoA reductase, mitochondrial
Low tissue specificity
Detected in all
DECR2
ENSSSCG00000007987
ENSG00000242612
2,4-dienoyl-CoA reductase 2
Tissue enhanced
Detected in all
liver:
48.7
male glands:
68.3
DEDD
ENSSSCG00000006365
ENSG00000158796
Death effector domain containing
Low tissue specificity
Detected in all
DEDD2
ENSSSCG00000030182
ENSG00000160570
Death effector domain containing 2
Low tissue specificity
Detected in all
DEF6
ENSSSCG00000001538
ENSG00000023892
DEF6, guanine nucleotide exchange factor
Low tissue specificity
Detected in all
DEF8
ENSSSCG00000002640
ENSG00000140995
Differentially expressed in FDCP 8 homolog
Low tissue specificity
Detected in all
DEFB1
ENSSSCG00000029990
ENSG00000164825
Beta-defensin 1 precursor
Group enriched
Detected in many
kidney:
122.3
large intestine:
44.2
male glands:
106.3
DEFB110
ENSSSCG00000001743
ENSG00000203970
Beta-defensin 110 precursor
Tissue enriched
Detected in some
epididymis:
52.3
DEFB116
ENSSSCG00000007215
ENSG00000215545
Defensin beta 116
Tissue enriched
Detected in some
epididymis:
104.3
DEFB128
ENSSSCG00000034080
ENSG00000185982
Defensin beta 128
Tissue enriched
Detected in some
epididymis:
252.3
DEFB135
ENSSSCG00000039911
ENSG00000205883
Defensin beta 135
Group enriched
Detected in some
epididymis:
100.1
male glands:
40.0
DEGS1
ENSSSCG00000024484
ENSG00000143753
Sphingolipid delta(4)-desaturase DES1
Low tissue specificity
Detected in all
DENND1A
ENSSSCG00000005585
ENSG00000119522
DENN domain containing 1A
Low tissue specificity
Detected in all
DENND1B
ENSSSCG00000010900
ENSG00000213047
DENN domain containing 1B
Low tissue specificity
Detected in all
DENND1C
ENSSSCG00000013546
ENSG00000205744
DENN domain containing 1C
Tissue enhanced
Detected in many
lymphoid tissue:
43.0
stomach:
51.9
DENND2A
ENSSSCG00000016497
ENSG00000146966
DENN domain containing 2A
Low tissue specificity
Detected in all
DENND2C
ENSSSCG00000006755
ENSG00000175984
DENN domain containing 2C
Tissue enhanced
Detected in many
cornea:
21.5
mouth:
19.6
skin:
41.0
DENND2D
ENSSSCG00000025704
ENSG00000162777
DENN domain containing 2D
Tissue enhanced
Detected in many
lymphoid tissue:
32.2
male glands:
30.5
stomach:
38.9
DENND3
ENSSSCG00000030831
ENSG00000105339
DENN domain containing 3
Low tissue specificity
Detected in all
DENND4A
ENSSSCG00000004938
ENSG00000174485
DENN domain containing 4A
Low tissue specificity
Detected in all
DENND4B
ENSSSCG00000006568
ENSG00000198837
DENN domain containing 4B
Low tissue specificity
Detected in all
DENND4C
ENSSSCG00000005170
ENSG00000137145
DENN domain containing 4C
Low tissue specificity
Detected in all
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