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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
UFD1
ENSSSCG00000010121
ENSG00000070010
Ubiquitin recognition factor in ER associated degradation 1
Low tissue specificity
Detected in all
UFL1
ENSSSCG00000004339
ENSG00000014123
E3 UFM1-protein ligase 1
Low tissue specificity
Detected in all
UFSP2
ENSSSCG00000015793
ENSG00000109775
UFM1 specific peptidase 2
Low tissue specificity
Detected in all
UGCG
ENSSSCG00000022780
ENSG00000148154
UDP-glucose ceramide glucosyltransferase
Low tissue specificity
Detected in all
UGDH
ENSSSCG00000030150
ENSG00000109814
UDP-glucose 6-dehydrogenase
Tissue enhanced
Detected in all
large intestine:
67.9
UGGT1
ENSSSCG00000015857
ENSG00000136731
UDP-glucose glycoprotein glucosyltransferase 1
Low tissue specificity
Detected in all
UGGT2
ENSSSCG00000009502
ENSG00000102595
UDP-glucose glycoprotein glucosyltransferase 2
Low tissue specificity
Detected in many
UGP2
ENSSSCG00000008368
ENSG00000169764
UTP--glucose-1-phosphate uridylyltransferase
Tissue enhanced
Detected in all
ovary:
97.5
UHMK1
ENSSSCG00000006342
ENSG00000152332
U2AF homology motif kinase 1
Low tissue specificity
Detected in all
UHRF1
ENSSSCG00000013517
ENSG00000276043
Ubiquitin like with PHD and ring finger domains 1
Tissue enriched
Detected in many
lymphoid tissue:
91.7
UHRF1BP1
ENSSSCG00000001532
ENSG00000065060
UHRF1 binding protein 1
Low tissue specificity
Detected in all
UHRF1BP1L
ENSSSCG00000026697
ENSG00000111647
UHRF1 binding protein 1 like
Low tissue specificity
Detected in all
UHRF2
ENSSSCG00000005201
ENSG00000147854
Ubiquitin like with PHD and ring finger domains 2
Low tissue specificity
Detected in all
UIMC1
ENSSSCG00000022508
ENSG00000087206
BRCA1-A complex subunit RAP80
Tissue enhanced
Detected in all
testis:
58.1
ULBP1
ENSSSCG00000026042
NKG2D ligand 1 precursor
Low tissue specificity
Detected in all
ULK1
ENSSSCG00000009742
ENSG00000177169
Unc-51 like autophagy activating kinase 1
Low tissue specificity
Detected in all
ULK2
ENSSSCG00000018045
ENSG00000083290
Unc-51 like autophagy activating kinase 2
Low tissue specificity
Detected in all
ULK3
ENSSSCG00000001898
ENSG00000140474
Unc-51 like kinase 3
Low tissue specificity
Detected in all
ULK4
ENSSSCG00000025408
ENSG00000168038
Unc-51 like kinase 4
Low tissue specificity
Detected in all
UMAD1
ENSSSCG00000036169
ENSG00000219545
UBAP1-MVB12-associated (UMA) domain containing 1
Low tissue specificity
Detected in all
UMODL1
ENSSSCG00000022290
ENSG00000177398
Uromodulin like 1
Tissue enhanced
Detected in many
male glands:
6.5
testis:
6.1
UMPS
ENSSSCG00000011864
ENSG00000114491
Uridine monophosphate synthetase
Low tissue specificity
Detected in all
UNC119
ENSSSCG00000017761
ENSG00000109103
Unc-119 lipid binding chaperone
Group enriched
Detected in many
pineal gland:
98.7
retina:
195.7
UNC119B
ENSSSCG00000020716
ENSG00000175970
Unc-119 lipid binding chaperone B
Low tissue specificity
Detected in all
UNC13A
ENSSSCG00000013880
ENSG00000130477
Unc-13 homolog A
Tissue enhanced
Detected in some
brain:
33.1
cornea:
9.0
pituitary gland:
12.7
retina:
12.2
UNC13B
ENSSSCG00000005305
ENSG00000198722
Unc-13 homolog B
Low tissue specificity
Detected in all
UNC13D
ENSSSCG00000017200
ENSG00000092929
Unc-13 homolog D
Tissue enhanced
Detected in many
lymphoid tissue:
37.8
UNC45A
ENSSSCG00000001821
ENSG00000140553
Protein unc-45 homolog A
Low tissue specificity
Detected in all
UNC45B
ENSSSCG00000017717
ENSG00000141161
Protein unc-45 homolog B
Tissue enhanced
Detected in all
heart:
26.3
skeletal muscle:
52.2
UNC50
ENSSSCG00000025010
ENSG00000115446
Unc-50 inner nuclear membrane RNA binding protein
Low tissue specificity
Detected in all
UNC5A
ENSSSCG00000014049
ENSG00000113763
Unc-5 netrin receptor A
Low tissue specificity
Detected in all
UNC5B
ENSSSCG00000010276
ENSG00000107731
Netrin receptor UNC5B precursor
Tissue enhanced
Detected in many
male glands:
52.4
UNC5C
ENSSSCG00000021874
ENSG00000182168
Unc-5 netrin receptor C
Tissue enhanced
Detected in many
brain:
24.2
cornea:
34.2
UNC5CL
ENSSSCG00000027922
ENSG00000124602
Unc-5 family C-terminal like
Tissue enhanced
Detected in all
large intestine:
24.3
small intestine:
23.8
UNC93B1
ENSSSCG00000012893
ENSG00000110057
Unc-93 homolog B1, TLR signaling regulator
Low tissue specificity
Detected in all
UNG
ENSSSCG00000009938
ENSG00000076248
Uracil DNA glycosylase
Tissue enhanced
Detected in all
male glands:
52.5
UNK
ENSSSCG00000017201
ENSG00000132478
Unkempt family zinc finger
Low tissue specificity
Detected in all
UPB1
ENSSSCG00000010060
ENSG00000100024
Beta-ureidopropionase 1
Group enriched
Detected in all
kidney:
78.6
liver:
120.3
UPF1
ENSSSCG00000039301
ENSG00000005007
UPF1, RNA helicase and ATPase
Low tissue specificity
Detected in all
UPF3B
ENSSSCG00000012617
ENSG00000125351
UPF3B, regulator of nonsense mediated mRNA decay
Low tissue specificity
Detected in all
UPK3A
ENSSSCG00000031423
ENSG00000100373
Uroplakin 3A
Low tissue specificity
Detected in all
UPP1
ENSSSCG00000030388
ENSG00000183696
Uridine phosphorylase 1
Tissue enhanced
Detected in many
male glands:
66.1
mouth:
19.9
UPRT
ENSSSCG00000012425
ENSG00000094841
Uracil phosphoribosyltransferase homolog
Low tissue specificity
Detected in all
UQCC1
ENSSSCG00000038237
ENSG00000101019
Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
Low tissue specificity
Detected in all
UQCC2
ENSSSCG00000030668
ENSG00000137288
Uncharacterized protein LOC100153818
Tissue enhanced
Detected in all
skeletal muscle:
46.1
UQCC3
ENSSSCG00000038370
ENSG00000204922
Ubiquinol-cytochrome c reductase complex assembly factor 3
Low tissue specificity
Detected in all
UQCR10
ENSSSCG00000024550
ENSG00000184076
Cytochrome b-c1 complex subunit 9
Tissue enhanced
Detected in all
skeletal muscle:
106.0
UQCRC1
ENSSSCG00000011356
ENSG00000010256
Ubiquinol-cytochrome c reductase core protein 1
Tissue enhanced
Detected in all
heart:
101.2
skeletal muscle:
104.1
UQCRC2
ENSSSCG00000007845
ENSG00000140740
Ubiquinol-cytochrome c reductase core protein 2
Tissue enhanced
Detected in all
skeletal muscle:
72.0
UQCRQ
ENSSSCG00000014289
ENSG00000164405
Ubiquinol-cytochrome c reductase complex III subunit VII
Tissue enhanced
Detected in all
choroid plexus:
69.6
heart:
66.3
skeletal muscle:
67.5
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