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Keyword
Chromosome
1
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7
8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TRIM56
ENSSSCG00000034347
ENSG00000169871
Tripartite motif containing 56
Low tissue specificity
Detected in many
TRIM58
ENSSSCG00000040066
ENSG00000162722
Tripartite motif containing 58
Tissue enhanced
Detected in all
lymphoid tissue:
27.9
TRIM59
ENSSSCG00000011732
ENSG00000213186
Tripartite motif containing 59
Tissue enriched
Detected in all
brain:
46.5
TRIM62
ENSSSCG00000003620
ENSG00000116525
Tripartite motif containing 62
Low tissue specificity
Detected in all
TRIM63
ENSSSCG00000027684
ENSG00000158022
E3 ubiquitin-protein ligase TRIM63
Group enriched
Detected in all
heart:
30.9
skeletal muscle:
48.3
TRIM65
ENSSSCG00000017195
ENSG00000141569
Tripartite motif containing 65
Low tissue specificity
Detected in all
TRIM66
ENSSSCG00000014567
ENSG00000166436
Tripartite motif containing 66
Low tissue specificity
Detected in all
TRIM68
ENSSSCG00000014768
ENSG00000167333
Tripartite motif containing 68
Low tissue specificity
Detected in all
TRIM7
ENSSSCG00000037835
ENSG00000146054
Tripartite motif containing 7
Tissue enhanced
Detected in many
skeletal muscle:
27.4
TRIM72
ENSSSCG00000007757
ENSG00000177238
Tripartite motif containing 72
Tissue enriched
Detected in all
skeletal muscle:
83.8
TRIM8
ENSSSCG00000038856
ENSG00000171206
Tripartite motif containing 8
Low tissue specificity
Detected in all
TRIO
ENSSSCG00000016781
ENSG00000038382
Trio Rho guanine nucleotide exchange factor
Low tissue specificity
Detected in all
TRIP10
ENSSSCG00000013554
ENSG00000125733
Thyroid hormone receptor interactor 10
Tissue enhanced
Detected in all
skeletal muscle:
67.4
TRIP11
ENSSSCG00000002445
ENSG00000100815
Thyroid hormone receptor interactor 11
Low tissue specificity
Detected in all
TRIP12
ENSSSCG00000024373
ENSG00000153827
Thyroid hormone receptor interactor 12
Low tissue specificity
Detected in all
TRIP13
ENSSSCG00000034522
ENSG00000071539
Pachytene checkpoint protein 2 homolog
Low tissue specificity
Detected in all
TRIP4
ENSSSCG00000004552
ENSG00000103671
Thyroid hormone receptor interactor 4
Tissue enhanced
Detected in all
lens:
56.4
TRIP6
ENSSSCG00000027486
ENSG00000087077
Thyroid hormone receptor interactor 6
Tissue enhanced
Detected in all
lens:
66.7
TRIQK
ENSSSCG00000037733
ENSG00000205133
Triple QxxK/R motif containing
Tissue enhanced
Detected in all
male glands:
50.8
TRIR
ENSSSCG00000013727
ENSG00000123144
Telomerase RNA component interacting RNase
Low tissue specificity
Detected in all
TRMO
ENSSSCG00000005370
ENSG00000136932
TRNA (adenine(37)-N6)-methyltransferase
Low tissue specificity
Detected in all
TRMT1
ENSSSCG00000013744
ENSG00000104907
TRNA (guanine(26)-N(2))-dimethyltransferase
Low tissue specificity
Detected in all
TRMT10A
ENSSSCG00000009180
ENSG00000145331
TRNA methyltransferase 10 homolog A
Low tissue specificity
Detected in all
TRMT10B
ENSSSCG00000005354
ENSG00000165275
TRNA methyltransferase 10B
Low tissue specificity
Detected in all
TRMT10C
ENSSSCG00000011956
ENSG00000174173
TRNA methyltransferase 10C, mitochondrial RNase P subunit
Low tissue specificity
Detected in all
TRMT11
ENSSSCG00000004220
ENSG00000066651
TRNA methyltransferase 11 homolog
Low tissue specificity
Detected in all
TRMT112
ENSSSCG00000013029
ENSG00000173113
TRNA methyltransferase subunit 11-2
Tissue enhanced
Detected in all
lens:
95.8
TRMT13
ENSSSCG00000006869
ENSG00000122435
TRNA methyltransferase 13 homolog
Low tissue specificity
Detected in all
TRMT1L
ENSSSCG00000021393
ENSG00000121486
TRNA methyltransferase 1 like
Low tissue specificity
Detected in all
TRMT2A
ENSSSCG00000010136
ENSG00000099899
TRNA methyltransferase 2 homolog A
Low tissue specificity
Detected in all
TRMT2B
ENSSSCG00000012489
ENSG00000188917
TRNA methyltransferase 2 homolog B
Low tissue specificity
Detected in all
TRMT44
ENSSSCG00000033873
ENSG00000155275
TRNA methyltransferase 44 homolog
Low tissue specificity
Detected in all
TRMT5
ENSSSCG00000024529
ENSG00000126814
TRNA methyltransferase 5
Low tissue specificity
Detected in all
TRMT6
ENSSSCG00000007046
ENSG00000089195
TRNA methyltransferase 6
Low tissue specificity
Detected in all
TRMT61A
ENSSSCG00000034738
ENSG00000166166
TRNA methyltransferase 61A
Tissue enhanced
Detected in all
liver:
38.9
TRMT61B
ENSSSCG00000030147
ENSG00000171103
TRNA methyltransferase 61B
Low tissue specificity
Detected in all
TRMT9B
ENSSSCG00000006969
ENSG00000250305
TRNA methyltransferase 9B (putative)
Tissue enhanced
Detected in many
brain:
36.7
heart:
22.8
TRMU
ENSSSCG00000000007
ENSG00000100416
TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
Low tissue specificity
Detected in all
TRNAU1AP
ENSSSCG00000030284
ENSG00000180098
TRNA selenocysteine 1 associated protein 1
Low tissue specificity
Detected in all
TRNP1
ENSSSCG00000027325
ENSG00000253368
TMF1-regulated nuclear protein 1
Tissue enhanced
Detected in many
brain:
20.8
retina:
17.6
salivary gland:
16.9
TRNT1
ENSSSCG00000011529
ENSG00000072756
TRNA nucleotidyl transferase 1
Tissue enhanced
Detected in all
lens:
45.0
TRO
ENSSSCG00000039027
ENSG00000067445
Trophinin
Tissue enhanced
Detected in many
brain:
11.4
liver:
21.4
skeletal muscle:
20.9
TROVE2
ENSSSCG00000032055
ENSG00000116747
TROVE domain family member 2
Low tissue specificity
Detected in all
TRPA1
ENSSSCG00000006186
ENSG00000104321
Transient receptor potential cation channel subfamily A member 1
Tissue enhanced
Detected in many
large intestine:
18.2
urinary bladder:
25.5
TRPC1
ENSSSCG00000011681
ENSG00000144935
Short transient receptor potential channel 1
Tissue enhanced
Detected in all
retina:
51.3
TRPC4AP
ENSSSCG00000007289
ENSG00000100991
Transient receptor potential cation channel subfamily C member 4 associated protein
Low tissue specificity
Detected in all
TRPC6
ENSSSCG00000024022
ENSG00000137672
Transient receptor potential cation channel subfamily C member 6
Low tissue specificity
Detected in many
TRPM2
ENSSSCG00000023762
ENSG00000142185
Transient receptor potential cation channel subfamily M member 2
Tissue enhanced
Detected in many
epididymis:
28.4
TRPM4
ENSSSCG00000022672
ENSG00000130529
Transient receptor potential cation channel subfamily M member 4
Tissue enhanced
Detected in many
stomach:
82.0
TRPM6
ENSSSCG00000005269
ENSG00000119121
Transient receptor potential cation channel subfamily M member 6
Tissue enhanced
Detected in many
kidney:
30.9
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