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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Keyword
Chromosome
1
2
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6
7
8
9
10
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12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TNRC18
ENSSSCG00000022553
ENSG00000182095
Trinucleotide repeat containing 18
Low tissue specificity
Detected in all
TNRC6A
ENSSSCG00000038870
ENSG00000090905
Trinucleotide repeat containing 6A
Low tissue specificity
Detected in all
TNRC6B
ENSSSCG00000000078
ENSG00000100354
Trinucleotide repeat containing 6B
Low tissue specificity
Detected in all
TNRC6C
ENSSSCG00000034373
ENSG00000078687
Trinucleotide repeat containing 6C
Low tissue specificity
Detected in all
TNS2
ENSSSCG00000000263
ENSG00000111077
Tensin 2
Low tissue specificity
Detected in all
TOB1
ENSSSCG00000040773
ENSG00000141232
Protein Tob1
Tissue enhanced
Detected in all
skeletal muscle:
128.5
TOB2
ENSSSCG00000037958
ENSG00000183864
Transducer of ERBB2, 2
Low tissue specificity
Detected in all
TOE1
ENSSSCG00000003918
ENSG00000132773
Target of EGR1, exonuclease
Low tissue specificity
Detected in all
TOGARAM1
ENSSSCG00000027765
ENSG00000198718
TOG array regulator of axonemal microtubules 1
Low tissue specificity
Detected in all
TOLLIP
ENSSSCG00000033033
ENSG00000078902
Toll-interacting protein
Low tissue specificity
Detected in all
TOM1
ENSSSCG00000038943
ENSG00000100284
Target of myb1 membrane trafficking protein
Low tissue specificity
Detected in all
TOM1L1
ENSSSCG00000017601
ENSG00000141198
Target of myb1 like 1 membrane trafficking protein
Tissue enhanced
Detected in many
male glands:
48.1
TOM1L2
ENSSSCG00000038639
ENSG00000175662
Target of myb1 like 2 membrane trafficking protein
Low tissue specificity
Detected in all
TOMM20
ENSSSCG00000010158
ENSG00000173726
Translocase of outer mitochondrial membrane 20
Low tissue specificity
Detected in all
TOMM34
ENSSSCG00000007383
ENSG00000025772
Mitochondrial import receptor subunit TOM34
Tissue enhanced
Detected in all
lens:
31.9
testis:
33.1
TOMM40
ENSSSCG00000003089
ENSG00000130204
Mitochondrial import receptor subunit TOM40 homolog
Low tissue specificity
Detected in all
TOMM40L
ENSSSCG00000006354
ENSG00000158882
Translocase of outer mitochondrial membrane 40 like
Low tissue specificity
Detected in all
TOMM7
ENSSSCG00000015384
ENSG00000196683
Mitochondrial import receptor subunit TOM7 homolog
Low tissue specificity
Detected in all
TOMM70
ENSSSCG00000011963
ENSG00000154174
Translocase of outer mitochondrial membrane 70
Tissue enhanced
Detected in all
brain:
62.1
TONSL
ENSSSCG00000025116
ENSG00000160949
Tonsoku like, DNA repair protein
Low tissue specificity
Detected in all
TOP1
ENSSSCG00000007355
ENSG00000198900
DNA topoisomerase I
Low tissue specificity
Detected in all
TOP1MT
ENSSSCG00000006958
ENSG00000184428
DNA topoisomerase I mitochondrial
Low tissue specificity
Detected in all
TOP2A
ENSSSCG00000017473
ENSG00000131747
DNA topoisomerase 2-alpha
Tissue enhanced
Detected in all
lymphoid tissue:
51.2
testis:
40.2
TOP2B
ENSSSCG00000011213
ENSG00000077097
DNA topoisomerase 2-beta
Low tissue specificity
Detected in all
TOP3A
ENSSSCG00000035839
ENSG00000177302
DNA topoisomerase III alpha
Low tissue specificity
Detected in all
TOP3B
ENSSSCG00000010078
ENSG00000100038
DNA topoisomerase III beta
Low tissue specificity
Detected in all
TOPAZ1
ENSSSCG00000029268
ENSG00000173769
Testis and ovary specific PAZ domain containing 1
Low tissue specificity
Detected in all
TOPBP1
ENSSSCG00000021966
ENSG00000163781
DNA topoisomerase II binding protein 1
Low tissue specificity
Detected in all
TOPORS
ENSSSCG00000011004
ENSG00000197579
TOP1 binding arginine/serine rich protein
Low tissue specificity
Detected in all
TOR1A
ENSSSCG00000034518
ENSG00000136827
Torsin-1A precursor
Low tissue specificity
Detected in all
TOR1AIP1
ENSSSCG00000032621
ENSG00000143337
Torsin 1A interacting protein 1
Low tissue specificity
Detected in all
TOR1AIP2
ENSSSCG00000035741
ENSG00000169905
Torsin A interacting protein 2
Low tissue specificity
Detected in all
TOR1B
ENSSSCG00000005683
ENSG00000136816
Torsin family 1 member B
Low tissue specificity
Detected in all
TOR2A
ENSSSCG00000005619
ENSG00000160404
Torsin family 2 member A
Low tissue specificity
Detected in all
TOR3A
ENSSSCG00000015525
ENSG00000186283
Torsin family 3 member A
Low tissue specificity
Detected in all
TOR4A
ENSSSCG00000005845
ENSG00000198113
Torsin family 4 member A
Tissue enhanced
Detected in many
stomach:
22.5
TOX
ENSSSCG00000006235
ENSG00000198846
Thymocyte selection associated high mobility group box
Tissue enhanced
Detected in many
lymphoid tissue:
54.8
stomach:
40.2
TOX4
ENSSSCG00000029203
ENSG00000092203
TOX high mobility group box family member 4
Low tissue specificity
Detected in all
TP23
ENSSSCG00000040242
Sus scrofa basic proline-rich protein (SL44-1), mRNA.
Tissue enriched
Detected in many
mouth:
49.3
TP53
ENSSSCG00000017950
ENSG00000141510
Cellular tumor antigen p53
Low tissue specificity
Detected in all
TP53BP1
ENSSSCG00000031949
ENSG00000067369
Tumor protein p53 binding protein 1
Low tissue specificity
Detected in all
TP53BP2
ENSSSCG00000010894
ENSG00000143514
Tumor protein p53 binding protein 2
Low tissue specificity
Detected in all
TP53I11
ENSSSCG00000031819
ENSG00000175274
Tumor protein p53 inducible protein 11
Low tissue specificity
Detected in many
TP53I13
ENSSSCG00000017788
ENSG00000167543
Tumor protein p53 inducible protein 13
Low tissue specificity
Detected in all
TP53I3
ENSSSCG00000008586
ENSG00000115129
Tumor protein p53 inducible protein 3
Low tissue specificity
Detected in all
TP53INP1
ENSSSCG00000034321
ENSG00000164938
Tumor protein p53 inducible nuclear protein 1
Low tissue specificity
Detected in all
TP53INP2
ENSSSCG00000022099
ENSG00000078804
Tumor protein p53 inducible nuclear protein 2
Tissue enhanced
Detected in many
adrenal gland:
54.2
brain:
119.3
TP53RK
ENSSSCG00000007452
ENSG00000172315
TP53 regulating kinase
Low tissue specificity
Detected in all
TP53TG5
ENSSSCG00000037072
ENSG00000124251
TP53 target 5
Tissue enhanced
Detected in all
testis:
49.7
TP63
ENSSSCG00000025592
ENSG00000073282
Tumor protein p63
Tissue enhanced
Detected in many
mouth:
48.3
skin:
103.2
urinary bladder:
41.9
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