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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
STUM
ENSSSCG00000024288
ENSG00000203685
Stum, mechanosensory transduction mediator homolog
Tissue enhanced
Detected in many
brain:
49.5
smooth muscle:
22.5
STX10
ENSSSCG00000013752
ENSG00000104915
Syntaxin 10
Low tissue specificity
Detected in all
STX11
ENSSSCG00000004125
ENSG00000135604
Syntaxin 11
Tissue enhanced
Detected in many
lung:
17.8
STX12
ENSSSCG00000024927
ENSG00000117758
Syntaxin-12
Low tissue specificity
Detected in all
STX17
ENSSSCG00000005386
ENSG00000136874
Syntaxin 17
Low tissue specificity
Detected in all
STX18
ENSSSCG00000038731
ENSG00000168818
Syntaxin 18
Tissue enhanced
Detected in all
endometrium:
55.9
STX19
ENSSSCG00000025170
ENSG00000178750
Syntaxin 19
Low tissue specificity
Detected in all
STX2
ENSSSCG00000009747
ENSG00000111450
Syntaxin 2
Low tissue specificity
Detected in all
STX3
ENSSSCG00000013119
ENSG00000166900
Syntaxin 3
Tissue enhanced
Detected in many
retina:
73.9
STX4
ENSSSCG00000007768
ENSG00000103496
Syntaxin 4
Low tissue specificity
Detected in all
STX5
ENSSSCG00000026293
ENSG00000162236
Syntaxin-5
Group enriched
Detected in many
cartilage:
18.5
lens:
32.2
male glands:
55.3
STX6
ENSSSCG00000015539
ENSG00000135823
Syntaxin-6
Low tissue specificity
Detected in all
STX7
ENSSSCG00000004190
ENSG00000079950
Syntaxin 7
Low tissue specificity
Detected in all
STX8
ENSSSCG00000034964
ENSG00000170310
Syntaxin 8
Low tissue specificity
Detected in all
STXBP1
ENSSSCG00000005617
ENSG00000136854
Syntaxin binding protein 1
Group enriched
Detected in many
brain:
70.7
retina:
66.1
STXBP2
ENSSSCG00000013576
ENSG00000076944
Syntaxin binding protein 2
Low tissue specificity
Detected in all
STXBP3
ENSSSCG00000006845
ENSG00000116266
Syntaxin binding protein 3
Low tissue specificity
Detected in all
STXBP4
ENSSSCG00000017602
ENSG00000166263
Syntaxin binding protein 4
Low tissue specificity
Detected in all
STXBP5
ENSSSCG00000004113
ENSG00000164506
Syntaxin binding protein 5
Low tissue specificity
Detected in all
STXBP5L
ENSSSCG00000039888
ENSG00000145087
Syntaxin binding protein 5 like
Tissue enhanced
Detected in all
brain:
55.6
pineal gland:
38.0
STXBP6
ENSSSCG00000001977
ENSG00000168952
Syntaxin-binding protein 6
Tissue enhanced
Detected in all
male glands:
64.5
STYX
ENSSSCG00000005039
ENSG00000198252
Serine/threonine/tyrosine interacting protein
Low tissue specificity
Detected in all
STYXL1
ENSSSCG00000020910
ENSG00000127952
Serine/threonine/tyrosine interacting like 1
Tissue enhanced
Detected in many
testis:
17.9
SUCLA2
ENSSSCG00000009405
ENSG00000136143
Succinate-CoA ligase ADP-forming beta subunit
Tissue enhanced
Detected in all
skeletal muscle:
69.3
SUCLG1
ENSSSCG00000008247
ENSG00000163541
Succinate--CoA ligase
Tissue enhanced
Detected in all
skeletal muscle:
114.4
SUCLG2
ENSSSCG00000011501
ENSG00000172340
Succinate-CoA ligase GDP-forming beta subunit
Low tissue specificity
Detected in all
SUCNR1
ENSSSCG00000022105
ENSG00000198829
Succinate receptor 1
Tissue enriched
Detected in many
liver:
28.7
SUCO
ENSSSCG00000015485
ENSG00000094975
SUN domain containing ossification factor
Tissue enhanced
Detected in all
lens:
132.9
SUDS3
ENSSSCG00000009849
ENSG00000111707
Sin3 histone deacetylase corepressor complex component SDS3
Low tissue specificity
Detected in all
SUFU
ENSSSCG00000010586
ENSG00000107882
SUFU negative regulator of hedgehog signaling
Tissue enhanced
Detected in all
epididymis:
70.9
SUGCT
ENSSSCG00000035581
ENSG00000175600
Succinyl-CoA:glutarate-CoA transferase
Low tissue specificity
Detected in all
SUGP1
ENSSSCG00000036970
ENSG00000105705
SURP and G-patch domain containing 1
Low tissue specificity
Detected in all
SUGP2
ENSSSCG00000025839
ENSG00000064607
SURP and G-patch domain containing 2
Tissue enhanced
Detected in all
testis:
71.0
SUGT1
ENSSSCG00000039338
ENSG00000165416
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone
Tissue enhanced
Detected in all
brain:
29.2
SULF1
ENSSSCG00000006197
ENSG00000137573
Sulfatase 1
Tissue enhanced
Detected in many
choroid plexus:
72.9
ovary:
48.2
SULF2
ENSSSCG00000007456
ENSG00000196562
Sulfatase 2
Tissue enhanced
Detected in all
cartilage:
77.4
cornea:
58.6
SULT1A3
ENSSSCG00000021557
ENSG00000196502,ENSG00000197165,ENSG00000213648,ENSG00000261052
Sulfotransferase 1A3
Tissue enhanced
Detected in many
adipose tissue:
70.7
cervix:
81.1
SULT1B1
ENSSSCG00000032374
ENSG00000173597
Sulfotransferase family 1B member 1
Tissue enhanced
Detected in all
large intestine:
40.1
SULT1C2
ENSSSCG00000022153
ENSG00000198203
Sulfotransferase family 1C member 2
Tissue enhanced
Detected in all
kidney:
34.7
stomach:
54.8
SULT1C4
ENSSSCG00000025836
ENSG00000198075
Sulfotransferase family 1C member 4
Low tissue specificity
Detected in all
SULT2A1
ENSSSCG00000033207
ENSG00000105398
Bile salt sulfotransferase
Tissue enhanced
Detected in all
liver:
61.0
SUMF1
ENSSSCG00000011532
ENSG00000144455
Sulfatase-modifying factor 1 precursor
Tissue enhanced
Detected in all
male glands:
63.6
SUMF2
ENSSSCG00000007745
ENSG00000129103
Sulfatase modifying factor 2
Low tissue specificity
Detected in all
SUMO1
ENSSSCG00000035842
ENSG00000116030
Small ubiquitin-related modifier 1
Low tissue specificity
Detected in all
SUMO2
ENSSSCG00000017212
ENSG00000188612
Small ubiquitin-related modifier 2
Low tissue specificity
Detected in all
SUMO3
ENSSSCG00000035795
ENSG00000184900
Small ubiquitin-like modifier 3
Low tissue specificity
Detected in all
SUN1
ENSSSCG00000007544
ENSG00000164828
Sad1 and UNC84 domain containing 1
Low tissue specificity
Detected in all
SUN2
ENSSSCG00000000094
ENSG00000100242
Sad1 and UNC84 domain containing 2
Low tissue specificity
Detected in all
SUN3
ENSSSCG00000022557
ENSG00000164744
Sad1 and UNC84 domain containing 3
Tissue enriched
Detected in all
testis:
51.6
SUOX
ENSSSCG00000000376
ENSG00000139531
Sulfite oxidase, mitochondrial
Low tissue specificity
Detected in all
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